SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11702

Length: 480 nt

UniGene Fasta

>biog2_v2.0_unigene11702
AATAGGGTAGCTGATGATTCTTCCGATGCAGAACCGCTTAGAGACGATTTCATCGAAGGGGACTTGCCTAGCGATGGCGATTCAGATGAAAGGGACAGCGACGAAGAGGAGGAGCTTGACATAGAGAAAAAGTCTCGTATTCTGGACGCTGAAAAGGAACGAGAACAGGAGGATGCAGACGCGGAATTACAGTTGAATATCCAGGAAGAGCCTGATGATTTTAGATTGCCTACTGCCGAAGAGCTGGAAGAAGAAGGAAAGCAGCCGCCTGATCTTCAGAATCTGAAGAGGAGAATAAAAAGAGATTGTTCGAGTTCTATCCAATTTTAAGGCTTTAAGGCAGGAAGGGACTATGCGCAAGGACTATGTTAACCAGCTTGTTGCAGATTTGTCTCTCTACTATGGCTATAATGAATATTTAATTCAGACTTTCCTCGAGATGTTTCCTGTTGCTGAGGTGGTAGAACTGATCGAAGCAAA

Ace file of the UniGene biog2_v2.0_unigene11702

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21664	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Proliferating-cell nucleolar antigen p120, putative n=1 Tax=Ricinus communis RepID=B9S9W8_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ribosomal rna methyltransferase nop2-like	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	0.0	-
Sma3	Nop2p	IPR011023	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRU4

Fln msg: Overlapping hits, possible frame ERROR between 300 and 299, Distance to subject end: 416 aas, your sequence is shorter than subject: 160 - 641

Fln protein: NRVADDSSDAEPLRDDFIEGDLPSDGDSDERDSDEEEELDIEKKSRILDAEKEREQEDADAELQLNIQEEPDDFRLPTAEELEEEGKQPPDLQNLKRRIxxEIVRVLSNFKALRQEGTMRKDYVNQLVADLSLYYGYNEYLIQTFLEMFPVAEVVELIEA

Protein Length: 161

Fln nts: AATAGGGTAGCTGATGATTCTTCCGATGCAGAACCGCTTAGAGACGATTTCATCGAAGGGGACTTGCCTAGCGATGGCGATTCAGATGAAAGGGACAGCGACGAAGAGGAGGAGCTTGACATAGAGAAAAAGTCTCGTATTCTGGACGCTGAAAAGGAACGAGAACAGGAGGATGCAGACGCGGAATTACAGTTGAATATCCAGGAAGAGCCTGATGATTTTAGATTGCCTACTGCCGAAGAGCTGGAAGAAGAAGGAAAGCAGCCGCCTGATCTTCAGAATCTGAAGAGGAGAATAxxxxxxGAGATTGTTCGAGTTCTATCCAATTTTAAGGCTTTAAGGCAGGAAGGGACTATGCGCAAGGACTATGTTAACCAGCTTGTTGCAGATTTGTCTCTCTACTATGGCTATAATGAATATTTAATTCAGACTTTCCTCGAGATGTTTCCTGTTGCTGAGGTGGTAGAACTGATCGAAGCAAA

Fln Alignment:

biogeco2_mira_c8305___ADDSSDAEPLRDDFIEGDLPXXXXXXXXXXXXXXXXXXXKKSRILDAEKEREQEDADAELQLNIQEEPDDFRLPTAEELEEEGKQPPDLQNLKRRIxEIVRVLSNFKALRQEGTMRKDYVNQLVADLSLYYGYNEYLIQTFLEMFPVAEVVELIEA
B8LRU4__________________ADDSSDAEPLRDDFIDGDLPSDGDSEERDSDEEEELDIEKKSRILDAEKEREQEDADAELQLNIQEEPDDFRLPTAQELEDEGKQPPDLQNLKRRIxEVVRVLSNFKALRQEGTTRKDYVNQLVADLSLYYGYNDYLVQTFLEMFPVAEVVELIEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain