SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11655

Length: 419 nt

UniGene Fasta

>biog2_v2.0_unigene11655
ATCTGCGAAGGATCTGGTCCACCTGGAGGAATTGGAGAAGCTACTGCTAGAAGATATATCCGTGATGTTGTTGCAGGTCTTATGTATCTTCATAGTCATAATATTGTGCATGGAGATATAAAACCAGAAAACCTTTTGGTTGACATCAACGGAAGGGTTAAGATTTGTGACTTTAGCGTAAGTCGGAGTTGAGGATGACAATGATGAACTTCGAAGATCTCCTGGTACACCAGTTTTTACGGCACCAGAATGCTGTTTAGGCTTGACATACCATGGTAAAGCTGCAGATGTCTGGGCATTGGGGTGACACTTTACTGTCTAGTGCTGGGTCAGTATCCTTTTATCGGTGAAACATTGCAGGATACTTATGATAAGATAGTCAACGATGAATTAATCATTCCTGAGGGTATGGATTCTGA

Ace file of the UniGene biog2_v2.0_unigene11655

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4593	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium/calmodulin-dependent protein kinase kinase, putative n=1 Tax=Ricinus communis RepID=B9SWC3_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	calcium calmodulin-dependent protein kinase kinase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phosphoinositide 3-kinase, accessory (PIK) domain	IPR001263	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Phosphatidylinositol Kinase	IPR015433	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9K4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 195 aas, your sequence is shorter than subject: 64 - 431

Fln protein: ICEGSGPPGGIGEATARRYIRDVVAGLMYLHSHNIVHGDIKPENLLVDINGRVKICDFSVSRS*

Protein Length: 65

Fln nts: ATCTGCGAAGGATCTGGTCCACCTGGAGGAATTGGAGAAGCTACTGCTAGAAGATATATCCGTGATGTTGTTGCAGGTCTTATGTATCTTCATAGTCATAATATTGTGCATGGAGATATAAAACCAGAAAACCTTTTGGTTGACATCAACGGAAGGGTTAAGATTTGTGACTTTAGCGTAAGTCGGAGTTGAGGATGACAATGATGAACTTCGAAGATCTCCTGGTACACCAGTTTTTACGGCACCAGAATGCTGTTTAGGCTTGACATACCATGGTAAAGCTGCAGATGTCTGGGCATTGGGGTGACACTTTACTGTCTAGTGCTGGGTCAGTATCCTTTTATCGGTGAAACATTGCAGGATACTTATGATAAGATAGTCAACGATGAATTAATCATTCCTGAGGGTATGGATTCTGA

Fln Alignment:

biogeco2_mira_c8253___GGIGEATARRYIRDVVAGLMYLHSHNIVHGDIKPENLLVDINGRVKICDFSVS
D5A9K4__________________GKLKEEEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDDNGVVKVSDFGLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain