SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11533

Length: 217 nt

UniGene Fasta

>biog2_v2.0_unigene11533
ATGGGGAAGTTCTTACTGCTGAGAACTTCAGATCTGTGCTTGGAGAGGAAGGGACCTGGCTGATATTGGTTTATTCTCTTGGAAGTGGAAATTCCCAGCAGTTTTCTCATAGCTGGAAAAGAATTGTTGGTTGGCTGGATGGAGTTGCCAATACTGGACAATTGGAGCTTGGTGAAGTCCAGCTTGCATCGTACCTTGCAGAAAGAGATCGAGCTAC

Ace file of the UniGene biog2_v2.0_unigene11533

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1965	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gb\|AAL47463.1\| At1g18700/F6A14_19 [Arabidopsis thaliana] gb\|AAN28915.1\| At1g18700/F6A14_19 [Arabidopsis thaliana] gb\|AEE29747.1\| DNAJ heat shock N-terminal domain-containing prote	-	-	43%
FL-Next	tr=Heat shock protein binding protein, putative; Ricinus communis (Castor bean).	-	-	61%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	63%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RLW4

Fln msg: Distance to subject end: 473 aas, your sequence is shorter than subject: 71 - 682

Fln protein: GEVLTAENFRSVLGEEGTWLILVYSLGSGNSQQFSHSWKRIVGWLDGVANTGQLELGEVQLASYLAERDRA

Protein Length: 72

Fln nts: ATGGGGAAGTTCTTACTGCTGAGAACTTCAGATCTGTGCTTGGAGAGGAAGGGACCTGGCTGATATTGGTTTATTCTCTTGGAAGTGGAAATTCCCAGCAGTTTTCTCATAGCTGGAAAAGAATTGTTGGTTGGCTGGATGGAGTTGCCAATACTGGACAATTGGAGCTTGGTGAAGTCCAGCTTGCATCGTACCTTGCAGAAAGAGATCGAGCTAC

Fln Alignment:

biogeco2_mira_c8097___LTAENFRSVLGEEGTWLILVYSLGSGNSQQFSHSWKRIVGWLDGVANTGQLELGEVQLASYLAER
B9RLW4__________________ITTEDFWSIFSDSKPWLIQVYSLGSSRSAQFSNSWKKIAYSLDGVANTGAVELGEVQLAISLAEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain