SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11482

Length: 239 nt

UniGene Fasta

>biog2_v2.0_unigene11482
TCTCGGATTATCAGTTTTCTGGACCAGAAGAACTCGAAGGAGGAGAGGAGTTGGATCCCCAAATCGAAGGGGCTATTCGAACCGCCTCTGTTCATGTAGCGATATTCTCGCCAAATTATGCTCTATCTAGATGGTGTCTCGATGAACTCGTACAGATGTTGGAGTCGGGTCCACAATAATTCCGGTCTTCTACAAAGTCAAGCCGCAGATCTTCGGTGGACGCGCGGCGGAGATGGAGT

Ace file of the UniGene biog2_v2.0_unigene11482

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11046	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	tir nbs lrr disease resistance protein	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	63%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	63%
Blast2go	Thiamine metabolism	00730	63%
Blast2go	Metabolic pathways	01100	63%

Source	GOs	Term	Type	Identity
Blast2go	innate immune response	GO:0045087	Biological Process	63%
Blast2go	apoptotic process	GO:0006915	Biological Process	63%
Blast2go	signal transduction	GO:0007165	Biological Process	63%
Blast2go	ATP binding	GO:0005524	Molecular Function	63%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	63%
Blast2go	transmembrane signaling receptor activity	GO:0004888	Molecular Function	63%
Blast2go	intrinsic to membrane	GO:0031224	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRB4

Fln msg: Overlapping hits, possible frame ERROR between 170 and 167, and possible frame ERROR between 205 and 208, Distance to subject end: 441 aas, your sequence is shorter than subject: 79 - 579

Fln protein: SDYQFSGPEELEGGEELDPQIEGAIRTASVHVAIFSPNYALSRWCLDELVQMLExxxTIIPVFYKVKxxDLRWTRGGDG

Protein Length: 80

Fln nts: TCTCGGATTATCAGTTTTCTGGACCAGAAGAACTCGAAGGAGGAGAGGAGTTGGATCCCCAAATCGAAGGGGCTATTCGAACCGCCTCTGTTCATGTAGCGATATTCTCGCCAAATTATGCTCTATCTAGATGGTGTCTCGATGAACTCGTACAGATGTTGGAGxxxxxxxxxACAATAATTCCGGTCTTCTACAAAGTCAAGCxxxCAGATCTTCGGTGGACGCGCGGCGGAGATGGAGT

Fln Alignment:

biogeco2_mira_c8041___PQIEGAIRTASVHVAIFSPNYALSRWCLDELVQMLESxSTIIPVFYKVKPxDLRWTRGGDG
B8LRB4__________________PQIEGAIRTASIHIAIFSPTYAESSWCLKELVMMLESxSTIIPVFYHVRPxELRWTRGGNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain