SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11479

Length: 273 nt

UniGene Fasta

>biog2_v2.0_unigene11479
CTCCAGGGAGACGTACAGGAAGTCTCCGGAAGGAGGAATTATTGATGTAGATGGTGAAGTTTTGGCCAGAGGTGAAGGAACATTGGGACAAAATGATGCCACCCTAATGTCATATGGGCCTACTATTGAAGTCACAATTGAGAAAGGCTTAGCCACTGTATTTTGTCCTTGATGAAAAACTGGTGGCCATTAATTTTAGGTTTAGCCACTGTATTTTGTCCTTGATGGACAAAACTGGTGGCCATTAATTTTATAAAACAATCTATTATTGAA

Ace file of the UniGene biog2_v2.0_unigene11479

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1775	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	sphingosine kinase 1 [Arabidopsis thaliana] gb\|AAM91597.1\| putative protein [Arabidopsis thaliana] gb\|AAP31965.1\| At4g21540 [Arabidopsis thaliana] gb\|AEE84465.1\| sphingosine kinase 1 [Arabidopsis thaliana]	-	-	46%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	65%
Blast2go	protein	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sphinganine kinase.	EC:2.7.1.91	-	0.0	67%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sphingolipid metabolism	00600		0.0	67%
Blast2go	Metabolic pathways	01100		0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	seed germination	GO:0009845	Biological Process	67%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	67%
Blast2go	phosphorylation	GO:0016310	Biological Process	67%
Blast2go	D-erythro-sphingosine kinase activity	GO:0017050	Molecular Function	67%
Blast2go	sphinganine kinase activity	GO:0008481	Molecular Function	67%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	0.0	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F2EGR4

Fln msg: your sequence is shorter than subject: 57 - 484

Fln protein: SRETYRKSPEGGIIDVDGEVLARGEGTLGQNDATLMSYGPTIEVTIEKGLATVFCP*

Protein Length: 58

Fln nts: CTCCAGGGAGACGTACAGGAAGTCTCCGGAAGGAGGAATTATTGATGTAGATGGTGAAGTTTTGGCCAGAGGTGAAGGAACATTGGGACAAAATGATGCCACCCTAATGTCATATGGGCCTACTATTGAAGTCACAATTGAGAAAGGCTTAGCCACTGTATTTTGTCCTTGA___TGAAAAACTGGTGGCCATTAATTTTAGGTTTAGCCACTGTATTTTGTCCTTGATGGACAAAACTGGTGGCCATTAATTTTATAAAACAATCTATTATTGAA

Fln Alignment:

biogeco2_mira_c8038___GGIIDVDGEVLARGEGTLGQN-DATLMSYGPTIEVTIEKGLATVFCP
F2EGR4__________________GGIVDVDGEVVARGEGTCGRNQDQDLMAYGPSVQLTVHQGLATVYCP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain