SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11473

Length: 525 nt

UniGene Fasta

>biog2_v2.0_unigene11473
AAGGAGGCTACCAATACCAGCAAGAGGAAGAGTAGAGATGTGGAGGACTCTGAGTGTCAAAGTGAGGATGTTGAATATGAATCTGCAGAAGCAAAGAAGCCAGCTCCGTCACGCACTACAACCTCCAAAAGAAGTCGTGCTGCAGAAGTTCATAATTTGTCAGAAAGGAGGCGAAGGGACAGGATAAAATGAGAAAATGAGGGCTTTACAAGAGCTTATACCTCACTGTAACAAGTCTGACAAAGCTTCGATGCTGGATGAAGCTATTGAGTACTTGAAAACACTTCAATTGCAAGTACAGATAATGTCAATGGGAGGTGGAATGGGTATGCCTCCATTTGTGTTTCCTGGAGGTATGCAGCATTTTCAGGTACCACAGATGGCACATCTGTCTCCTATGGGCATGGGCATAGGTATGGGATACGGCATGGGAGTGCTAGATATGGCTGCCACTTCAGGTCGACCTGTTATGTCATTGCCTTCCATGCATGTAATACAAGCACTTCCTGGTTCCACAATTCAACT

Ace file of the UniGene biog2_v2.0_unigene11473

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7562	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Helix-loop-helix DNA-binding [Medicago truncatula]	-	-	5.0e-32	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	phytochrome-interacting factor	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	0.0	59%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABG4

Fln msg: Distance to subject end: 135 aas, your sequence is shorter than subject: 109 - 244

Fln protein: MRALQELIPHCNKSDKASMLDEAIEYLKTLQLQVQIMSMGGGMGMPPFVFPGGMQHFQVPQMAHLSPMGMGIGMGYGMGVLDMAATSGRPVMSLPSMHVIQALPGSTIQ

Protein Length: 110

Fln nts: AAGGAGGCTACCAATACCAGCAAGAGGAAGAGTAGAGATGTGGAGGACTCTGAGTGTCAAAGTGAGGATGTTGAATATGAATCTGCAGAAGCAAAGAAGCCAGCTCCGTCACGCACTACAACCTCCAAAAGAAGTCGTGCTGCAGAAGTTCATAATTTGTCAGAAAGGAGGCGAAGGGACAGGATAAAATGAGAAA_-_ATGAGGGCTTTACAAGAGCTTATACCTCACTGTAACAAGTCTGACAAAGCTTCGATGCTGGATGAAGCTATTGAGTACTTGAAAACACTTCAATTGCAAGTACAGATAATGTCAATGGGAGGTGGAATGGGTATGCCTCCATTTGTGTTTCCTGGAGGTATGCAGCATTTTCAGGTACCACAGATGGCACATCTGTCTCCTATGGGCATGGGCATAGGTATGGGATACGGCATGGGAGTGCTAGATATGGCTGCCACTTCAGGTCGACCTGTTATGTCATTGCCTTCCATGCATGTAATACAAGCACTTCCTGGTTCCACAATTCAACT

Fln Alignment:

biogeco2_mira_c8032___MRALQELIPHCNKSDKASMLDEAIEYLKTLQLQVQIMSXXXXXXXXXXXXXXXXQHFQVPQMAHLSPXXXXXXXXXXXXVLDMAATSGRPVMSLPSMHVIQALPGSTI
D5ABG4__________________MRALQELIPHCNKSDKASMLDEAIEYLKTLQLQVQIMSMGGGMGMPPLVFPGGMQHFQVPQMAHLSPMGMGIGMGYSMGMLDMAATSGRPVMSLPSMHV-SALPGSAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain