SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11455

Length: 347 nt

UniGene Fasta

>biog2_v2.0_unigene11455
TTTGCAGGAGCAGGTATAACCATTTTGTGGGCCTTGGCTGCTGCCCTTGTTCCTGCAATGCAGAAGGGTAATGATGTTGCAAGAAGCCTGCATATAGCATTAAATGCCGTCAATGTTCTACTCTTTATTCGGCAGATTCCAACTGGTATCGAAATAGTATTGAAGGTCTTGGAGTTCACAAAATGGCCTTGAAGACAACTGCTCAGATGTCTGAACACTAATTTCCACTGAAGGGTTGGCACAGCATTTGTCTCCGACTAAATATTTTATTATAATGGATTGAATCGTGTGGATGGCGGATTGAAAGGCATACAGCTGAAATCATGTTTCATTCTTTTCCACGGGCT

Ace file of the UniGene biog2_v2.0_unigene11455

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2487	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB71894.1\| putative protein [Arabidopsis thaliana] gb\|AAL25578.1\| AT3g61870/F21F14_40 [Arabidopsis thaliana] gb\|AAM19988.1\| AT3g61870/F21F14_40 [Arabidopsis thaliana] gb\|AEE80272.1\| uncharacterized prote	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	uncharacterized protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZT2

Fln msg: your sequence is shorter than subject: 64 - 327

Fln protein: FAGAGITILWALAAALVPAMQKGNDVARSLHIALNAVNVLLFIRQIPTGIEIVLKVLEFTKWP*

Protein Length: 65

Fln nts: TTTGCAGGAGCAGGTATAACCATTTTGTGGGCCTTGGCTGCTGCCCTTGTTCCTGCAATGCAGAAGGGTAATGATGTTGCAAGAAGCCTGCATATAGCATTAAATGCCGTCAATGTTCTACTCTTTATTCGGCAGATTCCAACTGGTATCGAAATAGTATTGAAGGTCTTGGAGTTCACAAAATGGCCTTGA___AGACAACTGCTCAGATGTCTGAACACTAATTTCCACTGAAGGGTTGGCACAGCATTTGTCTCCGACTAAATATTTTATTATAATGGATTGAATCGTGTGGATGGCGGATTGAAAGGCATACAGCTGAAATCATGTTTCATTCTTTTCCACGGGCT

Fln Alignment:

biogeco2_mira_c8010___FAGAGITILWALAAALVPAMQKGNDVARSLHIALNAVNVLLFIRQIPTGIEIVLKVLEFTKWP
A9NZT2__________________FAGAGITILWALAAALVPAMQKGNGVARNLHIALNAVNVLLFIWQIPTGIEIVLKVLEFTTWP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain