SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11424

Length: 376 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11424
ATCGATGTTATTATCTTCCTTGATGGTTCAGTTAGCATCACGGATGATGGTCGAGGGATTCCCACAGATTTACATCCTGTTACACAGAAATCTGCTTTAGAGACTGTTTTGACGGTGTTGCATGCTGGAGGCAAGTTTGGTGGAGAAAGCAGTGGTTATAATGTTTCAGGAGGATTGCATGGCGTTGGTCTTTCTGTAGTGAATGCTTTATCTGAGAAATTGGAAGTGACAGTCTGGCGTGATGGAAAGGGATGGAATCAGACATTTGTGTGTGGAAAACCAGTGACTGAACTCACCTCTCATGAAATTTTTAGGTGAATCCAAATTTCGTCGAGGAACGCGTGTAAGGTTTTGGCCAGATAAAGAAGTCTTTACC

Ace file of the UniGene biog2_v2.0_unigene11424 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1817	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA gyrase subunit B, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRB_NICBE	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	dna gyrase subunit b	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA topoisomerase (ATP-hydrolyzing).	EC:5.99.1.3	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	DNA topological change	GO:0006265	Biological Process	79%
Blast2go	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	chromosome	GO:0005694	Cellular Component	79%
Blast2go	nucleoid	GO:0009295	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA	IPR001241	-	-
Sma3	DNA topoisomerase, type IIA, subunit B, C-terminal	IPR002288	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Toprim domain	IPR006171	-	-
Sma3	DNA gyrase, subunit B	IPR011557	-	-
Sma3	DNA topoisomerase, type IIA, subunit B, domain 2	IPR013506	-	-
Sma3	DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta	IPR013759	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLU9

Fln msg: Overlapping hits, possible frame ERROR between 309 and 305, Distance to subject end: 464 aas, your sequence is shorter than subject: 126 - 737

Fln protein: IDVIIFLDGSVSITDDGRGIPTDLHPVTQKSALETVLTVLHAGGKFGGESSGYNVSGGLHGVGLSVVNALSEKLEVTVWRDGKGWNQTFVCGKPVTELTSHxxxLGESKFRRGTRVRFWPDKEVFT

Protein Length: 127

Fln nts: ATCGATGTTATTATCTTCCTTGATGGTTCAGTTAGCATCACGGATGATGGTCGAGGGATTCCCACAGATTTACATCCTGTTACACAGAAATCTGCTTTAGAGACTGTTTTGACGGTGTTGCATGCTGGAGGCAAGTTTGGTGGAGAAAGCAGTGGTTATAATGTTTCAGGAGGATTGCATGGCGTTGGTCTTTCTGTAGTGAATGCTTTATCTGAGAAATTGGAAGTGACAGTCTGGCGTGATGGAAAGGGATGGAATCAGACATTTGTGTGTGGAAAACCAGTGACTGAACTCACCTCTCATxxxxxxxxxTTAGGTGAATCCAAATTTCGTCGAGGAACGCGTGTAAGGTTTTGGCCAGATAAAGAAGTCTTTACC

Fln Alignment:

biogeco2_mira_c7975___IDVIIFLDGSVSITDDGRGIPTDLHPVTQKSALETVLTVLHAGGKFGGESSGYNXXXXXXXXXXXXVNALSEKLEVTVWRDGKGWNQTFVCGKPVTELTSHxxLGESKFRRGTRVRFWPDKEVFT
B8LLU9__________________IDVIIFLDGSVSIMDDGRGIPTDLHPVTHKSALETVLTVLHAGGKFGGESSGYSVSGGLHGVGLSVVNALSEKLEVTVWRDGKEWNQTFACGKPVTELTSNxxLGEFKFRQGTRVRFWPDKEVFT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain