SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11388

Length: 367 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11388
CAACTCATTGCTGTACATGTCCGCTAACTGATGCAATATGTGTTGAATGTGAGCGGGCTATGGGGGATCATGGTGGGAGGATGTTCCGATGTTTTCATGTGATCAATGGTTGTGTGAGGATGATCAGTTTGAGCATCAAGCTTCCTGCCAACAGCTTGATAGTGAGACTTTTCATTGCTTGTCTTGCAATCGTCTTGGAATATATACATGCTTGCGTTGCAAGATTTGCTTCTGTGATGATCATGTGAAAAGTGTCACTAATGCAACCAAAAAAGGAGAGGGACTAACATGTAAGAAGTGTGGTTATGCTTTGAGAGAGACAAAAGACATGAGTGTTTCTGTTCGGCAACACAAGTTTGGACGCCAG

Ace file of the UniGene biog2_v2.0_unigene11388 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1509	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger protein 330 variant [Homo sapiens]	-	-	54%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	67%
Blast2go	zinc finger protein 330	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	chromosome, centromeric region	GO:0000775	Cellular Component	72%
Blast2go	nucleolus	GO:0005730	Cellular Component	72%
Blast2go	midbody	GO:0030496	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	NOA36	IPR010531	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SST9

Fln msg: Overlapping hits, possible frame ERROR between 95 and 92, Distance to subject end: 106 aas, your sequence is shorter than subject: 122 - 344

Fln protein: THCCTCPLTDAICVECERAMGDHGGRMFRxxxCDQWLCEDDQFEHQASCQQLDSETFHCLSCNRLGIYTCLRCKICFCDDHVKSVTNATKKGEGLTCKKCGYALRETKDMSVSVRQHKFGRQ

Protein Length: 123

Fln nts: CAACTCATTGCTGTACATGTCCGCTAACTGATGCAATATGTGTTGAATGTGAGCGGGCTATGGGGGATCATGGTGGGAGGATGTTCCGAxxxxxxxxxTGTGATCAATGGTTGTGTGAGGATGATCAGTTTGAGCATCAAGCTTCCTGCCAACAGCTTGATAGTGAGACTTTTCATTGCTTGTCTTGCAATCGTCTTGGAATATATACATGCTTGCGTTGCAAGATTTGCTTCTGTGATGATCATGTGAAAAGTGTCACTAATGCAACCAAAAAAGGAGAGGGACTAACATGTAAGAAGTGTGGTTATGCTTTGAGAGAGACAAAAGACATGAGTGTTTCTGTTCGGCAACACAAGTTTGGACGCCAG

Fln Alignment:

biogeco2_mira_c7929___THCCTCPLTDAICVECERAMGDHGGRMFRCxSCDQWLCEDDQFEHQASCQQLDSETFHCLSCNRLGIYTCLRCKICFCDDHVKSVTNATKKGEGLTCKKCGYALRETKDMSVSVRQHKFGRQ
A9SST9__________________THACNCPLVDATCIECERVVWEHGGRLFRCxSCDMWLCEDDQFEHQASCQQLDTETFHCLSCNRTGLYTCLRCKICFCDEHVKGVTNVAKRGEALMCKKCAYPLKETKDISVSVRIHKYGRQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain