SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11267

Length: 429 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11267
CGATGTCGTGGCGTTGCCCTATTCTTCCGGAACCACGGGGCTCCCCAAGGGCGTGATGTTAACGCACAAGAGCCTGGTGGCCAGTGTTGCCCAGCAGGTCGATGGTGAAAATCCCAATCTGTATTTCCATTCCGAGGACGTGATACTCTGTGTCTTGCCTCTTTTCCACATCTATTCTCTCAATTCGGTTCTCCTCTGCGCGCTCAGAGCCGGGGCTGCGACCCTGATTATGCAGAAATTCAACCTCACGACCTGTCTGGAGCTGATTCAGAAATACAAGGTTACCGTTGCCCCAATTGTGCCTCCGATTGTCCTGGACATCACTAAGAGCCCATCGTTTCCCAGTACGATGTCTCGTCCGTCCGGATAATCATGTCCGGCGCTGCGCCTCTCGGGAAGGAACTCGAAGATGCCCTCAGAGAGCGTTTT

Ace file of the UniGene biog2_v2.0_unigene11267 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8287	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	4-coumarate--CoA ligase n=18 Tax=Pinaceae RepID=4CL_PINTA	-	-	92%
FL-Next	tr=4-coumarate:CoA ligase; Pinus massoniana.	-	-	98%
Blast2go	4-coumarate: ligase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	0.0	87%
Blast2go	4-coumarate--CoA ligase.	EC:6.2.1.12	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	87%
Blast2go	Phenylalanine metabolism	00360	87%
Blast2go	Phenylpropanoid biosynthesis	00940	87%
Blast2go	Biosynthesis of phenylpropanoids	01061	87%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	phenylpropanoid metabolic process	GO:0009698	Biological Process	87%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	87%
Blast2go	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity	GO:0047077	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C1KBY2

Fln msg: Overlapping hits, possible frame ERROR between 334 and 331, Distance to subject end: 213 aas, your sequence is shorter than subject: 143 - 537

Fln protein: DVVALPYSSGTTGLPKGVMLTHKSLVASVAQQVDGENPNLYFHSEDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPIVPPIVLDITKxxxVSQYDVSSVRIIMSGAAPLGKELEDALRERF

Protein Length: 144

Fln nts: CGATGTCGTGGCGTTGCCCTATTCTTCCGGAACCACGGGGCTCCCCAAGGGCGTGATGTTAACGCACAAGAGCCTGGTGGCCAGTGTTGCCCAGCAGGTCGATGGTGAAAATCCCAATCTGTATTTCCATTCCGAGGACGTGATACTCTGTGTCTTGCCTCTTTTCCACATCTATTCTCTCAATTCGGTTCTCCTCTGCGCGCTCAGAGCCGGGGCTGCGACCCTGATTATGCAGAAATTCAACCTCACGACCTGTCTGGAGCTGATTCAGAAATACAAGGTTACCGTTGCCCCAATTGTGCCTCCGATTGTCCTGGACATCACTAAGxxxxxxxxxGTTTCCCAGTACGATGTCTCGTCCGTCCGGATAATCATGTCCGGCGCTGCGCCTCTCGGGAAGGAACTCGAAGATGCCCTCAGAGAGCGTTTT

Fln Alignment:

biogeco2_mira_c7785___DVVALPYSSGTTGLPKGVMLTHKSLVASVAQQVDGENPNLYFHSEDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPIVPPIVLDITKSxIVSQYDVSSVRIIMSGAAPLGKELEDALRERF
C1KBY2__________________DVVALPYSSGTTGLPKGVMLTHKGLVSSVAQQVDGENPNLYFHSEDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPIVPPIVLDITKSxIVSQYDVSSVRIIMSGAAPLGKELEDALRERF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain