SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11262

Length: 275 nt

UniGene Fasta

>biog2_v2.0_unigene11262
ATGGGTATCTTCAGTTGCCCCAATAAATTATGCACATTTAGCTGCAACCCAGATGCAGCAATTCTTGAAGGCAGATGAGCTTTCTGAAACAGCTTCCCGATCAGGAAGAGCTGAAGGGTCAACTGCATCTGGAGGAGGACATGTCCCTGAGCTCCCTGCTCTGCACCAAAATGTTTGCCACACAATGTTCTTCTGCTGAATCTTACAGAATTTTTTCTCCCTCATTCATGCATTTAATTCATTTAAACAACAATACTCTGATGAAATTGTCAGCA

Ace file of the UniGene biog2_v2.0_unigene11262

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6505	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL	-	-	81%
FL-Next	tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	77%
Blast2go	argonaute protein group	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q4PLA9

Fln msg: your sequence is shorter than subject: 66 - 959

Fln protein: WVSSVAPINYAHLAATQMQQFLKADELSETASRSGRAEGSTASGGGHVPELPALHQNVCHTMFFC*

Protein Length: 67

Fln nts: ATGGGTATCTTCAGTTGCCCCAATAAATTATGCACATTTAGCTGCAACCCAGATGCAGCAATTCTTGAAGGCAGATGAGCTTTCTGAAACAGCTTCCCGATCAGGAAGAGCTGAAGGGTCAACTGCATCTGGAGGAGGACATGTCCCTGAGCTCCCTGCTCTGCACCAAAATGTTTGCCACACAATGTTCTTCTGCTGA___ATCTTACAGAATTTTTTCTCCCTCATTCATGCATTTAATTCATTTAAACAACAATACTCTGATGAAATTGTCAGCA

Fln Alignment:

biogeco2_mira_c7780___VSSVAPINYAHLAATQMQQFLKADELSETASRSGRAEGSTASGGG----HVPELPALHQNVCHTMFFC
Q4PLA9__________________ISSVAPINYAHLAASQMQQFLKAEDLSETASRSGKGEGSVASGGGGYTAPVPELPVLHRNVCNTMFFC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain