SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11257

Length: 409 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11257
GACAATGTTATTATTATTCCACCTGTGGACATTTCCAGCTGCCCAGATCTAATACTTGGTGCCCCTAGTGCTCACGTTTATCTTGTTATTGTTGTCCCCAAACAAGATTGGTGTAGGACACTTTTTTGAGCTTTTTGACTCCTGACTACTATTTTTGGGCCTATATATAAGAAATTAGGGTTTATGAGACCTGCTGGTGCGTTTAGGTCGAGGGATTTTGTTGTGAAGAACTGAACTAGCAGTGAACTGTGTGGGCAGAAAGCAGGGATTGCTGGGTTTGACTTTATCAATATGCCGGCTGGTTTTATGATCCCGGCTAGACATGTGCCCCCGTTGATGGCTCGTCATACTAAAGCTGGTTATACAACCTCTTCCGGATTATCACTTGCACAGGTGCTATGAATTGTAG

Ace file of the UniGene biog2_v2.0_unigene11257 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11436	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Homeobox 1 n=1 Tax=Picea abies RepID=Q9FR59_PICAB	-	-	95%
FL-Next	tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	97%
Blast2go	homeobox-leucine zipper protein hdg2-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	85%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	85%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	85%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3		IPR012287	-	-
Sma3	Lipid-binding START	IPR002913	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FR59

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 724 aas, your sequence is shorter than subject: 37 - 763

Fln protein: MPAGFMIPARHVPPLMARHTKAGYTTSSGLSLAQVL*

Protein Length: 38

Fln nts: GACAATGTTATTATTATTCCACCTGTGGACATTTCCAGCTGCCCAGATCTAATACTTGGTGCCCCTAGTGCTCACGTTTATCTTGTTATTGTTGTCCCCAAACAAGATTGGTGTAGGACACTTTTTTGAGCTTTTTGACTCCTGACTACTATTTTTGGGCCTATATATAAGAAATTAGGGTTTATGAGACCTGCTGGTGCGTTTAGGTCGAGGGATTTTGTTGTGAAGAACTGAACTAGCAGTGAACTGTGTGGGCAGAAAGCAGGGATTGCTGGGTTTGACTTTATCAAT_-_ATGCCGGCTGGTTTTATGATCCCGGCTAGACATGTGCCCCCGTTGATGGCTCGTCATACTAAAGCTGGTTATACAACCTCTTCCGGATTATCACTTGCACAGGTGCTATGAATTGTAG

Fln Alignment:

biogeco2_mira_c7775___MPAGFMIPARHVPPLMARHTKAGYTTSSGLSLAQ
Q9FR59__________________MPAGFIIPARHVPPLMARHTKAGYTTSSGLSLAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain