SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11188

Length: 214 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11188
ATGTGGAAACACATGATACAGAAGGCCATTTTCCCAAAATCAGATTGTGCTGCTATATTTATTGATTGGTTTTGTGACCTAGGAAGAGTATTAGAAGCAATAAAGTATTCTACGGAGGCAATTACCAGAGGAGTGCAATTACCTGTTGAAACTATGACAAAGTTGAAGAACGCGTTGAGGCAAGCAGGTAAGCAAGATGCGTATGCACAACTTG

Ace file of the UniGene biog2_v2.0_unigene11188 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16393	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat protein-like protein [Hyacinthus orientalis]	-	-	4.00001e-41	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLL9

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 71 - 524

Fln protein: MWKHMIQKAIFPKSDCAAIFIDWFCDLGRVLEAIKYSTEAITRGVQLPVETMTKLKNALRQAGKQDAYAQL

Protein Length: 72

Fln nts: ATGTGGAAACACATGATACAGAAGGCCATTTTCCCAAAATCAGATTGTGCTGCTATATTTATTGATTGGTTTTGTGACCTAGGAAGAGTATTAGAAGCAATAAAGTATTCTACGGAGGCAATTACCAGAGGAGTGCAATTACCTGTTGAAACTATGACAAAGTTGAAGAACGCGTTGAGGCAAGCAGGTAAGCAAGATGCGTATGCACAACTTG

Fln Alignment:

biogeco2_mira_c7697___MWKHMIQKAIFPKSDCAAIFIDWFCDLGRVLEAIKYSTEAITRGVQLPVETMTKLKNALRQAGKQDAYAQL
B8LLL9__________________MWKHMIQKAIFPKSDCAAILIDGFCDLGRASEALKYSLEAITRGVQIPVETMTKLKNASRQAGKQDAYGQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain