SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11177

Length: 466 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11177
TCATTGCGTCTGGTAGTGGAATTACTGTGAATGTTTCCAGCAGTGGAAAGCCTCTCCATTCTGTAGATTTGCATGGCGTATTGACGGTCTCGCGGTTTGGCTCCAACAAAGATTTCAATGAAGGTAAAGAATTGACCAGGCTAGGAGGCAAAGGAGATAGGCGGCGGATTTGTTCTTGTAAAAGTGATAAAGCCTCAGAAGATAACGTTGAAGAGAAGAGTTTTAAAACATTGGATTGGCGCATTTCAGAACGATGGGATGTACCTTGGGATGGGAAAACAACTCTGCTTACTATGATAGCATGTGGATTGAGCTTTTTGTTGACAGGACTGGCAGAATCAGCAGCGGCATCCTACCTTGGGATTCAGCTAAGGCAATCAATGAGTTTAGATGAACGAGCTATTCTCCTTTTCATAGATCAATTCTTAATAACAGCTGTTGGCCTTACTGTCATATATGCTTTTGT

Ace file of the UniGene biog2_v2.0_unigene11177 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14301	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CAAX amino terminal protease family protein, putative [Solanum tuberosum]	-	-	54%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	49%
Blast2go	prenyl-dependent caax	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	74%
Blast2go	peptidase activity	GO:0008233	Molecular Function	74%
Blast2go	membrane	GO:0016020	Cellular Component	74%
Blast2go	plastid	GO:0009536	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	CAAX amino terminal protease	IPR003675	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B9HJS9

Fln msg: Distance to subject end: 185 aas, atg_distance in limit (1-15): atg_distance = 2, W2: There is no M at the beginning, your sequence is shorter than subject: 154 - 339

Fln protein: IASGSGITVNVSSSGKPLHSVDLHGVLTVSRFGSNKDFNEGKELTRLGGKGDRRRICSCKSDKASEDNVEEKSFKTLDWRISERWDVPWDGKTTLLTMIACGLSFLLTGLAESAAASYLGIQLRQSMSLDERAILLFIDQFLITAVGLTVIYAF

Protein Length: 155

Fln nts: TCATTGCGTCTGGTAGTGGAATTACTGTGAATGTTTCCAGCAGTGGAAAGCCTCTCCATTCTGTAGATTTGCATGGCGTATTGACGGTCTCGCGGTTTGGCTCCAACAAAGATTTCAATGAAGGTAAAGAATTGACCAGGCTAGGAGGCAAAGGAGATAGGCGGCGGATTTGTTCTTGTAAAAGTGATAAAGCCTCAGAAGATAACGTTGAAGAGAAGAGTTTTAAAACATTGGATTGGCGCATTTCAGAACGATGGGATGTACCTTGGGATGGGAAAACAACTCTGCTTACTATGATAGCATGTGGATTGAGCTTTTTGTTGACAGGACTGGCAGAATCAGCAGCGGCATCCTACCTTGGGATTCAGCTAAGGCAATCAATGAGTTTAGATGAACGAGCTATTCTCCTTTTCATAGATCAATTCTTAATAACAGCTGTTGGCCTTACTGTCATATATGCTTTTGT

Fln Alignment:

biogeco2_mira_c7683___RRRICSCKSDKASEDNVEEKSFKTLDWRISERWDVPWDGKTTLLTMIACGLSFLLTGLAESAAASYLGIQLRQSMSLDERAILLFIDQFLITAVGLTVIY
B9HJS9__________________RQLASSIYAGKESKAKVEEQD-KGLEWPIIKRWDVPWPWQTISLTSLACGISFILTGLVEATAIPYLGIKI-EELSLDEKAEILLLDQSIATAVVLGVLY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain