SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11170

Length: 498 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11170
GTTACAACAATCTTAGAGGACCCATTCCAGAATCCCTTGGAAATCTGAGGACGTTGCAAAAGCTGGATTTGAGCTCTAATTCCCTCACAGGGCACATTCCTGCAGCTCTTGGGAACCTGAACAACTTGGAGTTCATAGCTCTCAGCAACAATAAGATTACAGGCAGATTCCCCCTTCGCTGGGAAGTTTACAGAGCCTCCAGTACTTCATAATGGATAAGAATCCAATGTTTCTCCATTGCCTGTTGAACTTGGAAATCTCAGAAAGCTTCAGGAGCTTAGGCTTGCTAGTTCTGGGTACTCGGGTTCAATTCCTGTGGGTTATGGCAAACTTTCGAATCTAAGCTCTTTGAATTTGGAGAACAACAGGTTGTCAGGCAGGATTCCTTCCATTATAGGTAATCTTTCTCACATGTACCACCTTAATCTGAGTGGTAACATGCTGTCAGGGGCACTCCCTTTCTCTTCAGAGTTTTTGCACAGGTTAGGTAAGAACATA

Ace file of the UniGene biog2_v2.0_unigene11170 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene65603	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein NSP-INTERACTING KINASE 3 n=2 Tax=Arabidopsis RepID=NIK3_ARATH	-	-	5.0e-08	61%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	42%
Blast2go	receptor-like protein 12-like	-	-	1.05181e-10	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.05181e-10	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Guanine-nucleotide dissociation stimulator CDC25	IPR001895	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Separated hits, possible frame ERROR between 173 and 238, Distance to subject end: 582 aas, your sequence is shorter than subject: 166 - 1145

Fln protein: YNNLRGPIPESLGNLRTLQKLDLSSNSLTGHIPAALGNLNNLEFIALSNNKITGRFxxxxxxxxxxxxxxxxxxxxxxxLPVELGNLRKLQELRLASSGYSGSIPVGYGKLSNLSSLNLENNRLSGRIPSIIGNLSHMYHLNLSGNMLSGALPFSSEFLHRLGKNI

Protein Length: 167

Fln nts: GTTACAACAATCTTAGAGGACCCATTCCAGAATCCCTTGGAAATCTGAGGACGTTGCAAAAGCTGGATTTGAGCTCTAATTCCCTCACAGGGCACATTCCTGCAGCTCTTGGGAACCTGAACAACTTGGAGTTCATAGCTCTCAGCAACAATAAGATTACAGGCAGATTCCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGCCTGTTGAACTTGGAAATCTCAGAAAGCTTCAGGAGCTTAGGCTTGCTAGTTCTGGGTACTCGGGTTCAATTCCTGTGGGTTATGGCAAACTTTCGAATCTAAGCTCTTTGAATTTGGAGAACAACAGGTTGTCAGGCAGGATTCCTTCCATTATAGGTAATCTTTCTCACATGTACCACCTTAATCTGAGTGGTAACATGCTGTCAGGGGCACTCCCTTTCTCTTCAGAGTTTTTGCACAGGTTAGGTAAGAACATA

Fln Alignment:

biogeco2_mira_c7674___YNNLRGPIPESLGNLRTLQKLDLSSNSLTGHIPAALGNLNNLEFIALSNNKITGRFPxxxxxxxxxxxxxxxxxxxxxxLPVELGNLRKLQELRLASSGYSGSIPVGYGKXXXXXXXXXXXXXXSGRIPSIIGNLSHMYHLNLSGNMLSGALPFSSEFLHRL
Q9FEU2__________________HNRLTGSIPPSLFEIKNLTKLLLLSNELTGALPPEIGNCVALSRLRLGNNRLLNQIPxxxxxxxxxxxxxxxxxxxxxxLPPEIGNCVALSRLRLGNNRLLNQIPREIGKLENLVFLDLAMNQFSGSIPAEIGGCSQLQMLDLHGNRLGGELPRALGFLHGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain