SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11168

Length: 509 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11168
AATAAGTGAAAAGAAAGTCTCCACTTCAATTGAGGTTTTGTGTAGGTCTTACCCACCGGAGTTTGCCTCATATTTCCATTACTGCCGTGCATTGCGCTTTGATGACAAGCCAGATTATGCATACTTAAAGAGGATGTTCCGTGACTTGTTCATGCGAGAAGGTTTTAAGTCTGATTATGTTTTTGACTGGACTATCTTGAAGTACCAACAAACCCAAATTGCTGCTAGTCCTCGATCAACTCCTATTCTTGGAGCTGGAAAATCTGGTATAGCAGGTCTTACAGAAAGATTTTCAGCTGGACAAGAGGGCCATGCAGGAACCTCTCGAGCAGCCGAAGGGTTTAATCGGAGATCTAGTGGAGTCAATGGTATAGCTTTGAATCGAGCCGGAAGCCAATCTAAGTACAAGAGCTCTGGACAAGATGGCCCTTCAACATCCAAGAGAGTGGGAGTAGAAAATGAGCGTGGAAGTTCCACTATGCGAACTGGAAGCACGTCAAGGAGAGCAG

Ace file of the UniGene biog2_v2.0_unigene11168 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21780	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Casein kinase n=1 Tax=Beta vulgaris RepID=A2I5G0_BETVU	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Domain of unknown function DUF71, ATP-binding domain	IPR002761	-	-
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	YjgF/Yer057p/UK114 family	IPR006175	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Endoribonuclease L-PSP/chorismate mutase-like	IPR013813	-	-
Sma3	Translation elongation factor P/YeiP, conserved site	IPR013852	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC70

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 125 - 195

Fln protein: MFRDLFMREGFKSDYVFDWTILKYQQTQIAASPRSTPILGAGKSGIAGLTERFSAGQEGHAGTSRAAEGFNRRSSGVNGIALNRAGSQSKYKSSGQDGPSTSKRVGVENERGSSTMRTGSTSRRA

Protein Length: 126

Fln nts: AATAAGTGAAAAGAAAGTCTCCACTTCAATTGAGGTTTTGTGTAGGTCTTACCCACCGGAGTTTGCCTCATATTTCCATTACTGCCGTGCATTGCGCTTTGATGACAAGCCAGATTATGCATACTTAAAGAGG_-_ATGTTCCGTGACTTGTTCATGCGAGAAGGTTTTAAGTCTGATTATGTTTTTGACTGGACTATCTTGAAGTACCAACAAACCCAAATTGCTGCTAGTCCTCGATCAACTCCTATTCTTGGAGCTGGAAAATCTGGTATAGCAGGTCTTACAGAAAGATTTTCAGCTGGACAAGAGGGCCATGCAGGAACCTCTCGAGCAGCCGAAGGGTTTAATCGGAGATCTAGTGGAGTCAATGGTATAGCTTTGAATCGAGCCGGAAGCCAATCTAAGTACAAGAGCTCTGGACAAGATGGCCCTTCAACATCCAAGAGAGTGGGAGTAGAAAATGAGCGTGGAAGTTCCACTATGCGAACTGGAAGCACGTCAAGGAGAGCAG

Fln Alignment:

biogeco2_mira_c7672___MFRDLFMREGFKSDYVFDWTILKYQQTQIAASPRSTPILGAGKSGIA-GLTERFSAGQEGHAGTSRAAEGFNRRSSGVNGIALNRAGSQSKYKSSGQDGPSTSKRVGVENE
D5AC70__________________MFRDLFMREGFKSDYVFDWTILKYQQTQISASPRSTPILGAGKSGIATGLTERFSAGQEGHAGTSRATEGFNRRASGVNGIALNRSGSQSKYKSSGQDGPSTSKRVGAENE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain