SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11161

Length: 491 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11161
GGATTTGAAGGAGTATGCCACTAACATTGGAATGATGGACTCGGCCTACTTCGTTGGAAGGAACGAGCTCCTTGCATGGATCAACACGACTCTGCAACTCTCCCTCTGCAAAGTTGAAGAGGCTGCTTCTGGAGCAGTTCAATGTCAACTTATGGATGCTGTACACCCCGGTGTGGTTCCCATGCACAAGGTCAATTTTGATGCAAAGACAGAGTATGAGATGATTCAAAATTACAAAGTGCTGCAGGACGTGTTCAACAAGCTGAAGATTAACAAGTACATTGATGTTAACAAACTAGTAAAGGGGCGCCCACTGGACAATCTAGAATTCATGCAATGGTTAAAGAGATACTGTGATTCGGTAAATGGTGGAGTCATGAATAGTTACAATGCACTTGAACGGAGAGAGTCTTGCAAAGGTGGAAGAGAGGTTAACAAGAAGGCAGCTCCAGTAAACCCTTCAAGCAAGGGCAGTGCACTGGGGTCTAAAA

Ace file of the UniGene biog2_v2.0_unigene11161 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20950	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	end binding protein 1C [Arabidopsis thaliana] dbj\|BAB09646.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM65311.1\| microtubule-associated protein EB1-like protein [Arabidopsis thaliana] dbj\|BAD43258.1\| unknown protein [Arabidopsis thaliana] gb\|AB	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	microtubule-associated protein rp eb family member 1-like	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	thigmotropism	GO:0009652	Biological Process	68%
Blast2go	nucleolus	GO:0005730	Cellular Component	68%
Blast2go	phragmoplast	GO:0009524	Cellular Component	68%
Blast2go	cell wall	GO:0005618	Cellular Component	68%
Blast2go	spindle	GO:0005819	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Calponin homology domain	IPR001715	-	0.0	-
Sma3	EB1, C-terminal	IPR004953	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUA3

Fln msg: Distance to subject end: 169 aas, your sequence is shorter than subject: 153 - 329

Fln protein: MMDSAYFVGRNELLAWINTTLQLSLCKVEEAASGAVQCQLMDAVHPGVVPMHKVNFDAKTEYEMIQNYKVLQDVFNKLKINKYIDVNKLVKGRPLDNLEFMQWLKRYCDSVNGGVMNSYNALERRESCKGGREVNKKAAPVNPSSKGSALGSK

Protein Length: 154

Fln nts: GGATTTGAAGGAGTATGCCACTAACATTGGA_-_ATGATGGACTCGGCCTACTTCGTTGGAAGGAACGAGCTCCTTGCATGGATCAACACGACTCTGCAACTCTCCCTCTGCAAAGTTGAAGAGGCTGCTTCTGGAGCAGTTCAATGTCAACTTATGGATGCTGTACACCCCGGTGTGGTTCCCATGCACAAGGTCAATTTTGATGCAAAGACAGAGTATGAGATGATTCAAAATTACAAAGTGCTGCAGGACGTGTTCAACAAGCTGAAGATTAACAAGTACATTGATGTTAACAAACTAGTAAAGGGGCGCCCACTGGACAATCTAGAATTCATGCAATGGTTAAAGAGATACTGTGATTCGGTAAATGGTGGAGTCATGAATAGTTACAATGCACTTGAACGGAGAGAGTCTTGCAAAGGTGGAAGAGAGGTTAACAAGAAGGCAGCTCCAGTAAACCCTTCAAGCAAGGGCAGTGCACTGGGGTCTAAAA

Fln Alignment:

biogeco2_mira_c7663___ATNIGMMDSAYFVGRNELLAWINTTLQLSLCKVEEAASGAVQCQLMDAVHPGVVPMHKVNFDAKTEYEMIQNYKVLQDVFNKLKINKYIDVNKLVKGRPLDNLEFMQWLKRYCDSVNGGVMNSYNALERRESCKGGREVNKKAAP
A9NUA3__________________ATNIGMMDAAYFVGRNEILHWINTTLSLHLHKIEDAASGAVHRQLMDATHPGVVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKISKHIEVSKLVKGRPLDNLEFMQWMKRYCDSFNGGIVNNYNALERREACKGGKQANQKAAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain