SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11121

Length: 436 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11121
CTTTTCAAGACGCTTGGCTTCGGCAATAATGCTGCGTTGTTCTCAGCTGTCATNACGGGGCTNACCCTTGAAGTGGGGACATTCTGTCTCTTGCCACGGTTGATAAGGTCGGCAGAAGATTACTGTTCATTAGCGGAGGAATCATCATGTTCATCTCCCAGGTGGCCATTGCGGCAATTCTAGGCGTGAAATTTGGGAACTCCGGGGAAGGCAGTCTATCCAAGGGATTCGCCGTACTGGTTGTGCTTCTCATCTGCGTCTACGTCGTCTCCTTTGCCTGGTCATGGGGTCCTCTCGGATGGCTGGTTCCCAGCGAGATCTTTCCTCTGGAGGTCCGCTCAGCTGGGCAGAGCATCACTGTCTCTGTAAACCTTCTCTTCACATTCGTCATTGCGCAGGCATTTCTGGCCATGCTTTGCAACATGAAGTACGGGCT

Ace file of the UniGene biog2_v2.0_unigene11121 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11513	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Monosaccharide transport protein 1 n=3 Tax=Andropogoneae RepID=Q6B4G9_MAIZE	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	monosaccharide transport	GO:0015749	Biological Process	79%
Blast2go	transmembrane transport	GO:0055085	Biological Process	79%
Blast2go	sucrose transport	GO:0015770	Biological Process	79%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	79%
Blast2go	monosaccharide transmembrane transporter activity	GO:0015145	Molecular Function	79%
Blast2go	sucrose:hydrogen symporter activity	GO:0008506	Molecular Function	79%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	79%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVI3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 61 aas, your sequence is shorter than subject: 144 - 514

Fln protein: FQDAWLRQ*CCVVLSCHDGAYP*SGDILSLATVDKVGRRLLFISGGIIMFISQVAIAAILGVKFGNSGEGSLSKGFAVLVVLLICVYVVSFAWSWGPLGWLVPSEIFPLEVRSAGQSITVSVNLLFTFVIAQAFLAMLCNMKYG

Protein Length: 145

Fln nts: CTTTTCAAGACGCTTGGCTTCGGCAATAATGCTGCGTTGTTCTCAGCTGTCATgACGGGGCTtACCCTTGAAGTGGGGACATTCTGTCTCTTGCCACGGTTGATAAGGTCGGCAGAAGATTACTGTTCATTAGCGGAGGAATCATCATGTTCATCTCCCAGGTGGCCATTGCGGCAATTCTAGGCGTGAAATTTGGGAACTCCGGGGAAGGCAGTCTATCCAAGGGATTCGCCGTACTGGTTGTGCTTCTCATCTGCGTCTACGTCGTCTCCTTTGCCTGGTCATGGGGTCCTCTCGGATGGCTGGTTCCCAGCGAGATCTTTCCTCTGGAGGTCCGCTCAGCTGGGCAGAGCATCACTGTCTCTGTAAACCTTCTCTTCACATTCGTCATTGCGCAGGCATTTCTGGCCATGCTTTGCAACATGAAGTACGGGCT

Fln Alignment:

biogeco2_mira_c7618___LSLATVDKVGRRLLFISGGIIMFISQVAIAAILGVKFGNSGEGSLSKGFAXXXXXXXXXXXVSFAWSWGPLGWLVPSEIFPLEVRSAGQSITVSVNLLFTFVIAQAFLAMLCNMKYG
A9NVI3__________________VSIFSVDRIGRRFLFMEGGVQMFFSQILIAIVLGVKFGSSGEGSLSKGFAAFVVVLICVYVAAFAWSWGPLGWLVPSEIFPLEIRSAGQSINVSVNLLFTFIIAQAFLAMLCHMKFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain