SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11117

Length: 449 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11117
GGAAAATTGATCCATATCCACTGGTTTTTGATCATGCTGCTCAGTTTTTCACGGTGAGTGATCCAAGATTCAAGAAACTTGTGGATGGATGGGTCTCAAAAGGTGTAGTCAAAGAATGGGAAGGACCATTGGGTAAGCTGTGTCCTGGAGGCCAGTTTACTCCACTACCACCATGTTCAAGATATATTGGTACAAATGGGATGCAGCCTCTTGCAGATTCACTGCTTTCTCAGAGTAATTTGGTCAATATTGTGAGACCCTGTTGGGTGAGTAGATTGGAATCATTCAACGGGATGTGGCACCTCACTGAAAGGATGAAACCTCGTGGGGTNTTTGATGCTATTGTTATAGCTCATAATGGAAAATGTGCAAACAGCTTGCTTGCATCAGCTGGGATTCCACTCATTGCAAGACAGATGAAGAGGCTGGAGTTGAGTTCTATCTGGGCC

Ace file of the UniGene biog2_v2.0_unigene11117 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3594	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gb\|AAF04895.1\|AC011437_10 unknown protein [Arabidopsis thaliana] gb\|AAK91359.1\| AT3g04650/F7O18_13 [Arabidopsis thaliana] gb\|AAO42761.1\| At3g04650/F7O18_13 [Arabidopsis tha	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	70%
Blast2go	fad nad -binding oxidoreductase domain-containing protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Conserved hypothetical protein CHP00275, flavoprotein HI0933-like	IPR004792	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	FAD dependent oxidoreductase	IPR006076	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HVJ2

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 149 - 467

Fln protein: KIDPYPLVFDHAAQFFTVSDPRFKKLVDGWVSKGVVKEWEGPLGKLCPGGQFTPLPPCSRYIGTNGMQPLADSLLSQSNLVNIVRPCWVSRLESFNGMWHLTERMKPRGVFDAIVIAHNGKCANSLLASAGIPLIARQMKRLELSSIWA

Protein Length: 150

Fln nts: GGAAAATTGATCCATATCCACTGGTTTTTGATCATGCTGCTCAGTTTTTCACGGTGAGTGATCCAAGATTCAAGAAACTTGTGGATGGATGGGTCTCAAAAGGTGTAGTCAAAGAATGGGAAGGACCATTGGGTAAGCTGTGTCCTGGAGGCCAGTTTACTCCACTACCACCATGTTCAAGATATATTGGTACAAATGGGATGCAGCCTCTTGCAGATTCACTGCTTTCTCAGAGTAATTTGGTCAATATTGTGAGACCCTGTTGGGTGAGTAGATTGGAATCATTCAACGGGATGTGGCACCTCACTGAAAGGATGAAACCTCGTGGGGTtTTTGATGCTATTGTTATAGCTCATAATGGAAAATGTGCAAACAGCTTGCTTGCATCAGCTGGGATTCCACTCATTGCAAGACAGATGAAGAGGCTGGAGTTGAGTTCTATCTGGGCC

Fln Alignment:

biogeco2_mira_c7611___IDPYPLVFDHAAQFFTVSDPRFKKLVDGWVSKGVVKEWEGPLGKLCPGGQFTPLPPCS-RYIGTNGMQPLADSLLSQSNLVNIVRPCWVSRLESFNGMWHLTERMKPRGVFDAIVIAHNGKCANSLLASAGIPLIARQMKRLELSSIWA
F6HVJ2__________________IDPQSLIFDHAAQFFTVGDPRFAQLVDGWLEKGLVQQWQGMIGELEVGGQFVPLPSLPPRYIGVNGMRPLADSILSQTTMVNVVRPCWISKLDPFNGMWHLSENGKPHGQYDAIVIAHNGKCANHLLASSGLPLVARQMKKLELSSIWA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain