SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11079

Length: 238 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11079
ATCGATGTGGAGGCTCTGGGCCAGAGTACAGTTTCAAGACTCCGCCTGCACAGTTTCCAGTTGTTTTTGCAATTGTTGGTGACCTGGGTCAAACAGGATGGACATCAACAACTTTAGAACACATTCAACAATGTAACTATGATGTCCACATTTTGCCGGGTGATCTGTCATATGCCGACTACCAGCAGCATCTATGGGACTCGTTTGGACGGCTAGTGGAACCTTTGGCAAGCGCGAG

Ace file of the UniGene biog2_v2.0_unigene11079 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16936	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	purple acid phosphatase 18 [Arabidopsis thaliana] sp\|Q9LJU7.1\|PPA18_ARATH RecName: Full=Purple acid phosphatase 18; Flags: Precursor dbj\|BAB01159.1\| purple acid phosphatase-like protein [Arabidopsis thaliana] gb\|AAL32566.1\| purple acid phosphatase-like pr	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	purple acid phosphatase	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL20

Fln msg: Distance to subject end: 238 aas, your sequence is shorter than subject: 78 - 448

Fln protein: RCGGSGPEYSFKTPPAQFPVVFAIVGDLGQTGWTSTTLEHIQQCNYDVHILPGDLSYADYQQHLWDSFGRLVEPLASA

Protein Length: 79

Fln nts: ATCGATGTGGAGGCTCTGGGCCAGAGTACAGTTTCAAGACTCCGCCTGCACAGTTTCCAGTTGTTTTTGCAATTGTTGGTGACCTGGGTCAAACAGGATGGACATCAACAACTTTAGAACACATTCAACAATGTAACTATGATGTCCACATTTTGCCGGGTGATCTGTCATATGCCGACTACCAGCAGCATCTATGGGACTCGTTTGGACGGCTAGTGGAACCTTTGGCAAGCGCGAG

Fln Alignment:

biogeco2_mira_c7558___RCGGSGPEYSFKTPPAQFPVVFAIVGDLGQTGWTSTTLEHIQQCNYDVHILPGDLSYADYQQHLWDSFGRLVEPLAS
B8LL20__________________RCGGYGPEYSFKTPPAQFPIVFAIVGDLGQTGWTSTTLKHIQQCNYDVHILPGDLSYADYLQHLWDSFGRLVEPLAS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
197		66		33	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain