SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11071

Length: 240 nt

UniGene Fasta

>biog2_v2.0_unigene11071
ATGGGGGCTGGATGATGGCAGAATGAATCTCTTCATGAGGTTGGAGACCACTTCTCTCTCAGCAGAGAGAGGGTCAGACAGATAGAAGTAAAAGCCATGATTAAGCTACGACAGAACCACAGAACCCAAAATTTAAAGCATTATATAGACATCTAAATGACGAATATAACATCAGAAGACCTGCTTGCTACAGCAATCAGCTAGCTTAACACTGCAAAAAATGCGTAGCGCTCTGGTAAA

Ace file of the UniGene biog2_v2.0_unigene11071

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene738	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens RepID=E1C9M6_PHYPA	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	rna sigma 70 subfamily	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	transcription initiation, DNA-dependent	GO:0006352	Biological Process	76%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	76%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	76%
Blast2go	DNA binding	GO:0003677	Molecular Function	76%
Blast2go	sigma factor activity	GO:0016987	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase sigma-70 factor	IPR000943	-	-
Sma3	Aminotransferase class-III	IPR005814	-	-
Sma3	RNA polymerase sigma-70 region 3	IPR007624	-	-
Sma3	RNA polymerase sigma-70 region 2	IPR007627	-	-
Sma3	RNA polymerase sigma-70 region 4	IPR007630	-	-
Sma3	RNA polymerase sigma-70 region 1.2	IPR009042	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	RNA polymerase sigma-70	IPR014284	-	-
Sma3	RNA polymerase sigma factor, SigB/SigC/SigD, plastid	IPR016262	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQB0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 52 - 495

Fln protein: MGAG*WQNESLHEVGDHFSLSRERVRQIEVKAMIKLRQNHRTQNLKHYIDI*

Protein Length: 53

Fln nts: ATGGGGGCTGGATGATGGCAGAATGAATCTCTTCATGAGGTTGGAGACCACTTCTCTCTCAGCAGAGAGAGGGTCAGACAGATAGAAGTAAAAGCCATGATTAAGCTACGACAGAACCACAGAACCCAAAATTTAAAGCATTATATAGACATCTAA___ATGACGAATATAACATCAGAAGACCTGCTTGCTACAGCAATCAGCTAGCTTAACACTGCAAAAAATGCGTAGCGCTCTGGTAAA

Fln Alignment:

biogeco2_mira_c7549___ESLHEVGDHFSLSRERVRQIEVKAMIKLRQNHRTQNLKHYIDI
B8LQB0__________________KSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYLDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain