SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11058

Length: 320 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11058
GGGTTTTCAGCCAGGGGAAGCATTTGTGGTTCGCAGTATTTCCAATTTGGTTCCCAAACGGAAGGAGAATGACATTTCAGGAACTAGTGCTGCATTGGAATTTGCTGTTCTCTCTCTCAAGGTCGAGCATATATTAGTTATTGGTCACAGTCGTTGTGGAGGAATTAGGGCGCTTATGTCAATCCCAGATGAAGGAACAATTTCAAGTGAATTCATTGAAAGATGGGTGACAACAGCAAATGATGCACGCTTGCGCACAAAAGCTGTTGCTGGGCATCTCACATTAGATGAGCAATGTAGCTTCTGTGAAAAGGAGTCTG

Ace file of the UniGene biog2_v2.0_unigene11058 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene228	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Carbonic anhydrase n=1 Tax=Picea sitchensis RepID=A9P240_PICSI	-	-	92%
FL-Next	sp=Carbonic anhydrase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	carbonic anhydrase	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Carbonate dehydratase.	EC:4.2.1.1	-	0.0	70%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nitrogen metabolism	00910		0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	carbon utilization	GO:0015976	Biological Process	70%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	70%
Blast2go	carbonate dehydratase activity	GO:0004089	Molecular Function	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbonic anhydrase	IPR001765	-	0.0	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P240

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 106 - 303

Fln protein: GFQPGEAFVVRSISNLVPKRKENDISGTSAALEFAVLSLKVEHILVIGHSRCGGIRALMSIPDEGTISSEFIERWVTTANDARLRTKAVAGHLTLDEQCSFCEKES

Protein Length: 107

Fln nts: GGGTTTTCAGCCAGGGGAAGCATTTGTGGTTCGCAGTATTTCCAATTTGGTTCCCAAACGGAAGGAGAATGACATTTCAGGAACTAGTGCTGCATTGGAATTTGCTGTTCTCTCTCTCAAGGTCGAGCATATATTAGTTATTGGTCACAGTCGTTGTGGAGGAATTAGGGCGCTTATGTCAATCCCAGATGAAGGAACAATTTCAAGTGAATTCATTGAAAGATGGGTGACAACAGCAAATGATGCACGCTTGCGCACAAAAGCTGTTGCTGGGCATCTCACATTAGATGAGCAATGTAGCTTCTGTGAAAAGGAGTCTG

Fln Alignment:

biogeco2_mira_c7534___GFQPGEAFVVRSISNLVPKRKENDISGTSAALEFAVLSLKVEHILVIGHSRCGGIRALMSIPDEGTISSEFIERWVTTANDARLRTKAVAGHLTLDEQCSFCEKES
A9P240__________________GFQPGEAFVVRSIANLVPKRKENDLSGTSAALEFAVLSLKVEHILVIGHSRCGGIRALMSMPDEGTISSEFIERWVTTAKAARLHTKAVAGHLTLDDQCSFCEKES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain