SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11035

Length: 294 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11035
AACAGAAGGAAGGAGAACTGAATCTTTCAACCACTTAAAGACTGTTGCAGAGAGCTTGACAGCACTAGCATGGGTTACCTATACTGGGAAAGAGTGCGGACTGAGCCTTCCTGCTGCTCACGTGGAAGAAAGCTGGCAAACTGCAGAGTTCTATAATAACAAGGTTCTTGTTGAATACAAAAATAAAGATAGCAACCATGTTGAGTGGGCGAAGGCTATGAAGGAACTTTATGTGCCAGGGCTGAGGGACTTTGTGAGGAAATTCTATCCTCAGGGACCTGTTTGGAATACTGT

Ace file of the UniGene biog2_v2.0_unigene11035 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29415	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Adenylyl cyclase-associated protein n=1 Tax=Populus trichocarpa RepID=B9H0Q2_POPTR	-	-	67%
FL-Next	sp=Adenylyl cyclase-associated protein; Vitis vinifera (Grape).	-	-	80%
Blast2go	adenylyl cyclase-associated	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	0.0	79%
Blast2go	actin binding	GO:0003779	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Adenylate cyclase-associated CAP	IPR001837	-	-
Sma3	CARP motif	IPR006599	-	-
Sma3	Adenylate cyclase-associated CAP, C-terminal	IPR013912	-	-
Sma3	Adenylate cyclase-associated CAP, N-terminal	IPR013992	-	-
Sma3	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	IPR016098	-	-
Sma3	C-CAP/cofactor C-like domain	IPR017901	-	-
Sma3	CAP, conserved site	IPR018106	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TQ10

Fln msg: Distance to subject end: 259 aas, your sequence is shorter than subject: 97 - 472

Fln protein: TEGRRTESFNHLKTVAESLTALAWVTYTGKECGLSLPAAHVEESWQTAEFYNNKVLVEYKNKDSNHVEWAKAMKELYVPGLRDFVRKFYPQGPVWNT

Protein Length: 98

Fln nts: AACAGAAGGAAGGAGAACTGAATCTTTCAACCACTTAAAGACTGTTGCAGAGAGCTTGACAGCACTAGCATGGGTTACCTATACTGGGAAAGAGTGCGGACTGAGCCTTCCTGCTGCTCACGTGGAAGAAAGCTGGCAAACTGCAGAGTTCTATAATAACAAGGTTCTTGTTGAATACAAAAATAAAGATAGCAACCATGTTGAGTGGGCGAAGGCTATGAAGGAACTTTATGTGCCAGGGCTGAGGGACTTTGTGAGGAAATTCTATCCTCAGGGACCTGTTTGGAATACTGT

Fln Alignment:

biogeco2_mira_c7505___TEGRRTESFNHLKTVAESLTALAWVTYTGKECGLSLPAAHVEESWQTAEFYNNKVLVEYKNKDSNHVEWAKAMKELYVPGLRDFVRKFYPQGPVWN
D7TQ10__________________TEGRRSDFFNHLKTAADSLTALAWIAYTGKDCGMSLPIAHVEESWQMAEFYNNKILVEYKTKDPNHVEWAKALKELYVPGLRDYVKRFYPLGPVWN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain