SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10986

Length: 213 nt

UniGene Fasta

>biog2_v2.0_unigene10986
ATGGGGGACACGTTGGTGATTCACATTGCCTCTCCATCTCCTTCAATCAGGATTCCAGAATTGCCCGTCGAAGTGGATGAAGTCGAAGTCAGGGTCGACATTCAGAGCACAAATGTCAGTGCCGACGAGCCCAGGCCTGCGAAGCGCCAGGGTTTCGAGCTCGCCAAGAGCCCTGAAAACGCGGCTTCGAAATCCACTGCGCTCTCCTCTCCG

Ace file of the UniGene biog2_v2.0_unigene10986

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4686	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RVW3_RICCO	-	-	3.0e-31	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	squamosa promoter-binding	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	80%
Blast2go	metal ion binding	GO:0046872	Molecular Function	80%
Blast2go	DNA binding	GO:0003677	Molecular Function	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, SBP-box	IPR004333	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSA8

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 71 - 198

Fln protein: MGDTLVIHIASPSPSIRIPELPVEVDEVEVRVDIQSTNVSADEPRPAKRQGFELAKSPENAASKSTALSSP

Protein Length: 72

Fln nts: _-_ATGGGGGACACGTTGGTGATTCACATTGCCTCTCCATCTCCTTCAATCAGGATTCCAGAATTGCCCGTCGAAGTGGATGAAGTCGAAGTCAGGGTCGACATTCAGAGCACAAATGTCAGTGCCGACGAGCCCAGGCCTGCGAAGCGCCAGGGTTTCGAGCTCGCCAAGAGCCCTGAAAACGCGGCTTCGAAATCCACTGCGCTCTCCTCTCCG

Fln Alignment:

biogeco2_mira_c7439___PELPXXXXXXXXXXXIQSTNVSADEPRPAKRQGFELAKSPENAASKSTALSSP
A9NSA8__________________PELPVEMDEVEVKVDIQSTNASADEPRTAKRQGFELARIPEDPASKPTALSSP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain