SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10985

Length: 380 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10985
TTCCTGCTATGGCTGCTTCTACTGCTGAACTTAATATTGTAGATGAATCAAGTGACACAGAACTTTTGGCGTTAGCTTCAACATTAGTGTCCAGAGACGGTGACAAGAGTACTGAAAGAAGTATTCTCGTTAAAGCACTGCGGGAATACTGGAACAATTCAACTGCTATATCAATAAGATTATGTGAGCTGGGCCCTTTGCTTCGTGATTATCACCGTCTGATTTGTCAGTTGCAAAGCTCACTGGAACCAGTGGGGTTTCACCATGAATCTGGCAATTCAGCAATGCAGATGCATCGATTTTATCATCTGAAGAATGCTAATCAGTTGCGGATTGAGTTGATATCCCAGATCTTTTGAGCGAGTATAAACAACTACTAT

Ace file of the UniGene biog2_v2.0_unigene10985 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene31	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	galactose oxidase/kelch repeat-containing protein [Arabidopsis thaliana] ref\|NP_001031493.1\| galactose oxidase/kelch repeat-containing protein [Arabidopsis thaliana] gb\|AAM13022.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91329.1\| unknown protein [Ara	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	41%
Blast2go	galactose oxidase kelch repeat-containing protein	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: C6TF05

Fln msg: your sequence is shorter than subject: 119 - 201

Fln protein: PAMAASTAELNIVDESSDTELLALASTLVSRDGDKSTERSILVKALREYWNNSTAISIRLCELGPLLRDYHRLICQLQSSLEPVGFHHESGNSAMQMHRFYHLKNANQLRIELISQIF*

Protein Length: 120

Fln nts: TTCCTGCTATGGCTGCTTCTACTGCTGAACTTAATATTGTAGATGAATCAAGTGACACAGAACTTTTGGCGTTAGCTTCAACATTAGTGTCCAGAGACGGTGACAAGAGTACTGAAAGAAGTATTCTCGTTAAAGCACTGCGGGAATACTGGAACAATTCAACTGCTATATCAATAAGATTATGTGAGCTGGGCCCTTTGCTTCGTGATTATCACCGTCTGATTTGTCAGTTGCAAAGCTCACTGGAACCAGTGGGGTTTCACCATGAATCTGGCAATTCAGCAATGCAGATGCATCGATTTTATCATCTGAAGAATGCTAATCAGTTGCGGATTGAGTTGATATCCCAGATCTTTTGA___GCGAGTATAAACAACTACTAT

Fln Alignment:

biogeco2_mira_c7438___AMAASTAELNIVDESSDTELLALASTLVSRDGDKSTERSILVKALREYWNNSTAISIRLCELGPLLRDYHRLICQLQSSLEPVGFHHESGNSAMQMHRFYHLKNANQLRIELISQI
C6TF05__________________SVSESNSRLHIVNELEDKELLELASRLA---GENVSTNSLAIEALREHWRKSESNMVKLKELGPLLRDYQRLI--YRQYLERSASAQQPGFGEQVMHQLYHVKNATQLRMDDIPKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain