SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10915

Length: 225 nt

UniGene Fasta

>biog2_v2.0_unigene10915
ATGGGGTCGAAGGAAAGCTCGCAGAATTTGATTTATGGCCACAAGCAAACAAACCTTCCTGTTCTCTAAGTGGTGGCAATAAACGCAAGTTATCAGTGGCCATAGCAATGATTGGAGATCCTCCTCTCGTCATTTTAGATGAACCTTCAACGGGTATGGACCCTATTGCAAAGCGATTTATGTGGGATGTCATCTCACGTATATCAACTAGGCAAGGGAAAACAG

Ace file of the UniGene biog2_v2.0_unigene10915

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3713	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter AtABCA1 [Arabidopsis thaliana]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	abc transporter a family member 1	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sulfate-transporting ATPase.	EC:3.6.3.25	-	0.0	79%
Blast2go		EC:3.6.3.3-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	79%
Blast2go	sulfate transmembrane-transporting ATPase activity	GO:0015419	Molecular Function	79%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	ferric-transporting ATPase activity	GO:0015408	Molecular Function	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA1

Fln msg: Distance to subject end: 264 aas, your sequence is shorter than subject: 74 - 788

Fln protein: GVEGKLAEFDLWPQANKPSCSLSGGNKRKLSVAIAMIGDPPLVILDEPSTGMDPIAKRFMWDVISRISTRQGKT

Protein Length: 75

Fln nts: ATGGGGTCGAAGGAAAGCTCGCAGAATTTGATTTATGGCCACAAGCAAACAAACCTTCCTGTTCTCTAAGTGGTGGCAATAAACGCAAGTTATCAGTGGCCATAGCAATGATTGGAGATCCTCCTCTCGTCATTTTAGATGAACCTTCAACGGGTATGGACCCTATTGCAAAGCGATTTATGTGGGATGTCATCTCACGTATATCAACTAGGCAAGGGAAAACAG

Fln Alignment:

biogeco2_mira_c7342___EGKLAEFDLWPQANKPSCSLSGGNKRKLSVAIAMIGDPPLVILDEPSTGMDPIAKRFMWDVI
C0PRA1__________________ENLLSQVKLSEAAHIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPVTRRYVWDII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain