SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10909

Length: 414 nt

UniGene Fasta

>biog2_v2.0_unigene10909
GAATCATCACTGTTGATTATACATCTGCAGAAAATGTTCTCTCCTTGCTTGATTTATCAACAGAGCACAATGCTTTGGAAATGGCAAATCGATTGGAGGCAGCCATATACACATGGAAAAGAAGAATACACAGTAGGCAGAGCATGTTGATTGAGGATGGGAAAACTGGTGTTAAATCTTCATGGTCCATAGTTAAAGAGTCTGAAAATGAACTGGGAAGAAAAGAGCTGTACATGGAAAGGGCAGAGAATATTCTATTGAGCCTGAAGAGCAAGTTCCCAAGCATACCACAGACTTTCCTAGACATCACCAAAATTCAGTACAACAGGGATGTTGGCCACTCTATTTTGGAAAGCTACTCCAGGGTGTTGGAAAGCCTAGCCTTCAATATCCTGTCACGAATTAATGATGTTA

Ace file of the UniGene biog2_v2.0_unigene10909

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1706	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RHO guanyl-nucleotide exchange factor 7 [Arabidopsis thaliana] emb\|CAB82974.1\| putative protein [Arabidopsis thaliana] gb\|AAU94394.1\| At5g02010 [Arabidopsis thaliana] gb\|AAV59279.1\| At5g02010 [Arabidopsis thaliana] gb\|AED90419.1\| RHO guanyl-nucleotide exc	-	-	46%
FL-Next	sp=Rho guanine nucleotide exchange factor 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	48%
Blast2go	protein	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-
Sma3	Plant specific Rop nucleotide exchanger, PRONE	IPR005512	-	-
Sma3	TRAM/LAG1/CLN8 homology domain	IPR006634	-	-
Sma3	Erythromycin resistance leader peptide-2	IPR012559	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LV40

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 137 - 523

Fln protein: IITVDYTSAENVLSLLDLSTEHNALEMANRLEAAIYTWKRRIHSRQSMLIEDGKTGVKSSWSIVKESENELGRKELYMERAENILLSLKSKFPSIPQTFLDITKIQYNRDVGHSILESYSRVLESLAFNILSRINDV

Protein Length: 138

Fln nts: GAATCATCACTGTTGATTATACATCTGCAGAAAATGTTCTCTCCTTGCTTGATTTATCAACAGAGCACAATGCTTTGGAAATGGCAAATCGATTGGAGGCAGCCATATACACATGGAAAAGAAGAATACACAGTAGGCAGAGCATGTTGATTGAGGATGGGAAAACTGGTGTTAAATCTTCATGGTCCATAGTTAAAGAGTCTGAAAATGAACTGGGAAGAAAAGAGCTGTACATGGAAAGGGCAGAGAATATTCTATTGAGCCTGAAGAGCAAGTTCCCAAGCATACCACAGACTTTCCTAGACATCACCAAAATTCAGTACAACAGGGATGTTGGCCACTCTATTTTGGAAAGCTACTCCAGGGTGTTGGAAAGCCTAGCCTTCAATATCCTGTCACGAATTAATGATGTTA

Fln Alignment:

biogeco2_mira_c7336___ITVDYTSAENVLSLLDLSTEHNALEMANRLEAAIYTWKRRIHSRQSMLIEDGKTGVKSSWSIVKESENELGRKELYMERAENILLSLKSKFPSIPQTFLDITKIQYNRDVGHSILESYSRVLESLAFNILSRINDV
Q9LV40__________________ITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKDT----------KSSWG----SAVSLEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRIEDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain