SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10891

Length: 509 nt

UniGene Fasta

>biog2_v2.0_unigene10891
ATGGGGAAGCCGTCATTTGCATCTCAAGCATTTTTGAATAAGCAGGCTCACGTGGAGATTAAAGAAGCTCTGAGAGGTTTTGATCGAGCAGAAGGGGCAACATGTCGAAGAATGGAAAGGGAGGCCCTGGTAGAGCTCTGGTCAAGCATCACAATCACCTCGTCACTGAAGCAAAGAAGCAGGGCTATGGTAGAACCAAGCGCGTCTTGGAATCAGTCACAGACGTCAAGGATGTTGAAGTCGTCATCGAGGAAGCAGAGGAGGCCGGCCGCCTATTCTCTGCGCAAAATCCAGAGCCCAACCTCCTTATCAGCCTTGATTTGAATTCATCAAATAATGGGTTGACTCCGAGTGAGAGAAAGGAACAGCAGAAAGCAGAAGAGGCACTGTATAAAGACAGTATCCAAATACCTAGAAGGCCACCGTGGCATGCTGAGATGCCTACAGAAGAACTTGATGCTAGAGAAAGACAATCATTTTTGAATTGGCGCAGAAAACTTGCCAGGGTG

Ace file of the UniGene biog2_v2.0_unigene10891

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2191	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to GTP-binding family protein n=1 Tax=Vitis vinifera RepID=UPI0001985842	-	-	57%
FL-Next	tr=GTP binding protein, putative; Ricinus communis (Castor bean).	-	-	52%
Blast2go	large subunit gtpase 1 homolog	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	GTP binding	GO:0005525	Molecular Function	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3		IPR002917	-	-
Sma3		IPR005289	-	-
Sma3	GTP binding domain	IPR006073	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9RJ08

Fln msg: Distance to subject end: 454 aas, your sequence is shorter than subject: 136 - 596

Fln protein: MSKNGKGGPGRALVKHHNHLVTEAKKQGYGRTKRVLESVTDVKDVEVVIEEAEEAGRLFSAQNPEPNLLISLDLNSSNNGLTPSERKEQQKAEEALYKDSIQIPRRPPWHAEMPTEELDARERQSFLNWRRKLARV

Protein Length: 137

Fln nts: ATGGGGAAGCCGTCATTTGCATCTCAAGCATTTTTGAATAAGCAGGCTCACGTGGAGATTAAAGAAGCTCTGAGAGGTTTTGATCGAGCAGAAGGGGCAAC_-_ATGTCGAAGAATGGAAAGGGAGGCCCTGGTAGAGCTCTGGTCAAGCATCACAATCACCTCGTCACTGAAGCAAAGAAGCAGGGCTATGGTAGAACCAAGCGCGTCTTGGAATCAGTCACAGACGTCAAGGATGTTGAAGTCGTCATCGAGGAAGCAGAGGAGGCCGGCCGCCTATTCTCTGCGCAAAATCCAGAGCCCAACCTCCTTATCAGCCTTGATTTGAATTCATCAAATAATGGGTTGACTCCGAGTGAGAGAAAGGAACAGCAGAAAGCAGAAGAGGCACTGTATAAAGACAGTATCCAAATACCTAGAAGGCCACCGTGGCATGCTGAGATGCCTACAGAAGAACTTGATGCTAGAGAAAGACAATCATTTTTGAATTGGCGCAGAAAACTTGCCAGGGTG

Fln Alignment:

biogeco2_mira_c7313___MSKNGKGGPGRALVKHHNHLVTEAKKQGY---GRTKRVLXXXXXXXXXXXXXXXXXXAGRLFSAQNPEPXXXXXXXXXXXXXGL---TPSERKEQQKAEEALYKDSIQIPRRPPWHAEMPTEELDARERQSFLNWRRKLA
B9RJ08__________________MGKNEKTKLGRALVKHHNQMIQQSKEKGRYYNSLHKKVLESVTEVSDIDAVIEQAEEADLLFSHQLPAAAPNQPISLDVSSSGISDMTPKERREQQKKEEALHASSLRVPRRPPWNAEMSIEELDDNEKHAFLTWRRTLA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain