SustainPineDB

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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10870

Length: 300 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10870
TACAAGCGAATGGGCTTTTGATGACAAAATCCTTCAAACATATTAGTAAACGCCAAGGAGGTTCTCACTCTGAAAATAGTTGTTTGTTTTTGACGTCCGAGAAGAACATCCATCTGGTCTGCGACTAGATCTATTCGGGATCAGTTTTTCCATCTCCAAAATTCACAAGCATTGCAGAGATTTTGGCCACCGATAAAATTTCTCGGGCCTAACGCCTTTAAATGGTTTACAATATGTCGAAAGATCTAGGACTCCCGGGCTTCGGAGATGGAATCATTTAGCCTTTACAACTATAGAGTC

Ace file of the UniGene biog2_v2.0_unigene10870 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene54843	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ACC synthase n=3 Tax=Pinaceae RepID=A2IA39_9CONI	-	-	3.0e-16	53%
FL-Next	tr=Truncated ACC synthase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	0.0	54%
Blast2go	1-aminocyclopropane-1-carboxylate synthase	-	-	1.30604e-22	68%

Source	InterPros	Term	Type	Identity
Sma3	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A2IA43

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 92 aas, your sequence is shorter than subject: 93 - 399

Fln protein: QANGLLMTKSFKHISKRQGGSHSENSCLFLTSEKNIHLVCD*IYSGSVFPSPKFTSIAEILATDKISRA*RL*MVYNMSKDLGLPGFGDGII*

Protein Length: 94

Fln nts: TACAAGCGAATGGGCTTTTGATGACAAAATCCTTCAAACATATTAGTAAACGCCAAGGAGGTTCTCACTCTGAAAATAGTTGTTTGTTTTTGACGTCCGAGAAGAACATCCATCTGGTCTGCGACTAGATCTATTCGGGATCAGTTTTTCCATCTCCAAAATTCACAAGCATTGCAGAGATTTTGGCCACCGATAAAATTTCTCGGGCCTAACGCCTTTAAATGGTTTACAATATGTCGAAAGATCTAGGACTCCCGGGCTTCGGAGATGGAATCATTTAGCCTTTACAACTATAGAGTC

Fln Alignment:

biogeco2_mira_c7284___QANGLLMTKSFKHISKRQGGSHSENSCLFLTSEKNIHLVCD*IYSGSVFPSPKFTSIAEILATDKISRA*RL*MVYNMSKDLGLPGFGDGII
A2IA43__________________QVKGLLITNPSNPLGTTMDATALRKLLAFV-SGKNIHLVCDEIYSGSVFSSPKFTSIAEILATDKTYQSERVHIIYSLSKDLGLPGFRVGVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain