SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10842

Length: 336 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10842
TCACACTTGAATACTCTTTTCAGTTTACCTGTCCTGGGATGGGACTCACTCCACTAAGAGATTGAATGCCATCTTTGCTCGCCAAATATGGAGCAGAAATTCATCCCAATTTAATCTTTTATCTATCCGACTCGGCCATGGCATACATACGCCTCCTACACCCTAATGATACATACTGCATAACGCCTTTATCAGAGCGTATTGTCACCATGGTTTTTTATGCTGTTTCTTATCCTCTCTTTTCAAAGCTCCATCACCTTTCTGTCAGTGTATAATTCTTAGTCCAGACAGATACTCCGATCTTGTTATTTGGTCCAAACAAGCCTCCCCCATGTA

Ace file of the UniGene biog2_v2.0_unigene10842 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene31084	1/2
SustainPine v2.0	sp_v2.0_unigene55315	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	inositol pentakisphosphate 2-kinase [Glycine max]	-	-	8.0e-07	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	inositol-pentakisphosphate 2-kinase-like	-	-	5.91285e-27	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol-pentakisphosphate 2-kinase.	EC:2.7.1.158	-	5.91285e-27	80%

Source	KEGGs	Term	e value	Identity
Blast2go	Inositol phosphate metabolism	00562	5.91285e-27	80%
Blast2go	Metabolic pathways	01100	5.91285e-27	80%
Blast2go	Phosphatidylinositol signaling system	04070	5.91285e-27	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	5.91285e-27	80%
Blast2go	defense response to virus	GO:0051607	Biological Process	5.91285e-27	80%
Blast2go	myo-inositol hexakisphosphate biosynthetic process	GO:0010264	Biological Process	5.91285e-27	80%
Blast2go	cellular phosphate ion homeostasis	GO:0030643	Biological Process	5.91285e-27	80%
Blast2go	defense response to fungus	GO:0050832	Biological Process	5.91285e-27	80%
Blast2go	inositol pentakisphosphate 2-kinase activity	GO:0035299	Molecular Function	5.91285e-27	80%
Blast2go	inositol tetrakisphosphate 2-kinase activity	GO:0032942	Molecular Function	5.91285e-27	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol-pentakisphosphate 2-kinase	IPR009286	-	0.0	-
Sma3		IPR018009	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR02

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 55 - 184

Fln protein: HT*ILFSVYLSWDGTHSTKRLNAIFARQIWSRNSSQFNLLSIRLGHGIHTPPTP*

Protein Length: 56

Fln nts: TCACACTTGAATACTCTTTTCAGTTTACCTGTCCTGGGATGGGACTCACTCCACTAAGAGATTGAATGCCATCTTTGCTCGCCAAATATGGAGCAGAAATTCATCCCAATTTAATCTTTTATCTATCCGACTCGGCCATGGCATACATACGCCTCCTACACCCTAA___TGATACATACTGCATAACGCCTTTATCAGAGCGTATTGTCACCATGGTTTTTTATGCTGTTTCTTATCCTCTCTTTTCAAAGCTCCATCACCTTTCTGTCAGTGTATAATTCTTAGTCCAGACAGATACTCCGATCTTGTTATTTGGTCCAAACAAGCCTCCCCCATGTA

Fln Alignment:

biogeco2_mira_c7250___SVYLSWDGTHSTKRLNAIFARQIWSRNS---SQFNLLSIRLGHGIHTPP
A9NR02__________________NAYMFWDGIHPTERLNAIVAKEIWSGNSSVISPFNLSSLVLGNGIQTPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain