SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10825

Length: 315 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10825
GTCCGGAGTTTATGAATCGAGTTGATGAGTATATTGTATTCCAGCCTTTAGACTCACGTCAAATTACTCGTATAGTTGAGCTACAGCTGAAGCGTGTCCAAGATAGACTAAAACAGAAGAAGATCAATCTTAAATTCACTCAGGATGCCGTTACTGTGCTTGGTAACTTTGGCTTTGATCCCAACTTTGGTGCAAGGCCAGTGAAGAGGGTGATACAGCAGATGGTTGAGAATGAACTCGCGTTAGGCTTCCTTAAAGGAGATTTCAAGGAAGACGACACAGTTTTAGTTGATGCTGAGATCACAGCATTGTCAA

Ace file of the UniGene biog2_v2.0_unigene10825 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4558	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone clpb, putative n=1 Tax=Ricinus communis RepID=B9RNX1_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	chaperone protein mitochondrial-like	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	protein processing	GO:0016485	Biological Process	89%
Blast2go	response to heat	GO:0009408	Biological Process	89%
Blast2go	ATPase activity	GO:0016887	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	Chaperonin ClpB	IPR017730	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8K5

Fln msg: Distance to subject end: 33 aas, your sequence is shorter than subject: 104 - 292

Fln protein: PEFMNRVDEYIVFQPLDSRQITRIVELQLKRVQDRLKQKKINLKFTQDAVTVLGNFGFDPNFGARPVKRVIQQMVENELALGFLKGDFKEDDTVLVDAEITALS

Protein Length: 105

Fln nts: GTCCGGAGTTTATGAATCGAGTTGATGAGTATATTGTATTCCAGCCTTTAGACTCACGTCAAATTACTCGTATAGTTGAGCTACAGCTGAAGCGTGTCCAAGATAGACTAAAACAGAAGAAGATCAATCTTAAATTCACTCAGGATGCCGTTACTGTGCTTGGTAACTTTGGCTTTGATCCCAACTTTGGTGCAAGGCCAGTGAAGAGGGTGATACAGCAGATGGTTGAGAATGAACTCGCGTTAGGCTTCCTTAAAGGAGATTTCAAGGAAGACGACACAGTTTTAGTTGATGCTGAGATCACAGCATTGTCAA

Fln Alignment:

biogeco2_mira_c7232___PEFMNRVDEYIVFQPLDSRQITRIVELQLKRVQDRLKQKKINLKFTQDAVTVLGNFGFDPNFGARPVKRVIQQMVENELALGFLKGDFKEDDTVLVDAEITALS
D5A8K5__________________PEFMNRIDEYIVFQPLDREQINSIVRLQLDRVQQRLRDRKITLKVTDSGVELLGSMGYDPNYGARPVKRVIQQHVENELAKEILRGDIKEEDTVLVDTEMTTFA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain