SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10820

Length: 418 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10820
GAATTCTTGTGTTGGGGGAGACGATTTGTGGGCCGATTTGCTGTCGGGTTGTGGGAATTCGATCGGATTTGGCTCTGGGTGGTGGAAATTGGATCGGCTTGCCCATTGGGTGGAGAAAAGTATTAAGCATTAAAGATTTCAGGCATTTGGCCCGCTGGTTTGGACTGTTTTTAGGTCTGAGGAAGAGCCTTGATTAGAAATATGGCCAGGAACGAGTCTGGAGATGCGGCCAGCACATCTGAGTTTCATGTCTTGGCAGTGGACGACAGTGTTCTGGATCGAAATTGATTGAAAACTATTGAAATCTCTTCATATCGAGTCACCACAGTTGATAGCGTAAGAAAGCTTTGCAATTCCTTGGCTTGAGGACGACGAAGATGACCTGAATGTTGATAACATTCAGGTCAATATGATAATC

Ace file of the UniGene biog2_v2.0_unigene10820 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14224	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Response regulator 1 n=1 Tax=Pinus pinea RepID=C0LLL0_PINPI	-	-	90%
FL-Next	tr=Response regulator 1; Pinus pinea (Italian stone pine).	-	-	79%
Blast2go	type-a response regulator	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	71%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0LLL0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 111 aas, your sequence is shorter than subject: 55 - 184

Fln protein: MARNESGDAASTSEFHVLAVDDSVLDRN*LKTIEISSYRVTTVDSVRKLCNSLA*

Protein Length: 56

Fln nts: GAATTCTTGTGTTGGGGGAGACGATTTGTGGGCCGATTTGCTGTCGGGTTGTGGGAATTCGATCGGATTTGGCTCTGGGTGGTGGAAATTGGATCGGCTTGCCCATTGGGTGGAGAAAAGTATTAAGCATTAAAGATTTCAGGCATTTGGCCCGCTGGTTTGGACTGTTTTTAGGTCTGAGGAAGAGCCTTGATTAGAAAT_-_ATGGCCAGGAACGAGTCTGGAGATGCGGCCAGCACATCTGAGTTTCATGTCTTGGCAGTGGACGACAGTGTTCTGGATCGAAATTGATTGAAAACTATTGAAATCTCTTCATATCGAGTCACCACAGTTGATAGCGTAAGAAAGCTTTGCAATTCCTTGGCTTGAGGACGACGAAGATGACCTGAATGTTGATAACATTCAGGTCAATATGATAATC

Fln Alignment:

biogeco2_mira_c7225___MARNESGDAASTSEFHVLAVDDSVLDRN*L-KTIEISSYRVTTVDSVRK
C0LLL0__________________MARNESGDAASTSEFHVLVVDDSVLDRKLIEKLLKISSYRVTAVDRVRK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain