SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10802

Length: 372 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10802
GAGGACCTATTATGAGTGCCTATGCAGGATCTTGGGGGTCGAGACTAGTGTTTCGGATGACGATGCTGTCTCGGCGTACGAGAAATTGGACGACGAGCGAAGGTCCTTGTGCTGGGACTTCGTGCTTTCCAATCATCCGGTGAAACTGCTTCATCCTTTCACCAAGAAATGGAGGGCCCGCGAGCAGGCCATGACTGCATCAGGTGGGAGCAGTGAGGTGGAAGATGAAGAGGAAAGCGAGGATGGAGAAGCGTCTGCTGGAATGCAAATGGAGGTGGAGCAACATTCTACTGATCAGCAAATGGAGGTGGAGCAAGATTCTACTGATCAGCAGGCAATGTTTTGGGAAAAAGAGTTCAAGAACTCGCTGAG

Ace file of the UniGene biog2_v2.0_unigene10802 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3285	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tymo_45kd_70kd domain containing protein	-	-	8.0e-05	21%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	32%
Blast2go	uncharacterized protein	-	-	0.0	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9N972

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 123 - 591

Fln protein: RTYYECLCRILGVETSVSDDDAVSAYEKLDDERRSLCWDFVLSNHPVKLLHPFTKKWRAREQAMTASGGSSEVEDEEESEDGEASAGMQMEVEQHSTDQQMEVEQDSTDQQAMFWEKEFKNSL

Protein Length: 124

Fln nts: GAGGACCTATTATGAGTGCCTATGCAGGATCTTGGGGGTCGAGACTAGTGTTTCGGATGACGATGCTGTCTCGGCGTACGAGAAATTGGACGACGAGCGAAGGTCCTTGTGCTGGGACTTCGTGCTTTCCAATCATCCGGTGAAACTGCTTCATCCTTTCACCAAGAAATGGAGGGCCCGCGAGCAGGCCATGACTGCATCAGGTGGGAGCAGTGAGGTGGAAGATGAAGAGGAAAGCGAGGATGGAGAAGCGTCTGCTGGAATGCAAATGGAGGTGGAGCAACATTCTACTGATCAGCAAATGGAGGTGGAGCAAGATTCTACTGATCAGCAGGCAATGTTTTGGGAAAAAGAGTTCAAGAACTCGCTGAG

Fln Alignment:

biogeco2_mira_c7200___TYYECLCRILGVETSVSDDDAVSAYEKLDDERRSLCWDFVLSNHPVKLLHPFTKKWRAR----------------------EQAMTXXXXXXXXXXXXXXXXXXXXXGMQME---VEQHSTDQQMEVEQDSTDQQ----AMFWEKEFKNSL
B9N972__________________TYYEGLCKIVKVSQKAFVDDVVNAYEKMSDERKSECLGFLMRNHPVQLLHPYTKEWKAKLEEIELGCDAPDDDEEYGKNETEYTEWIEDDGDGDGDGDGDGDDQDDVVLDMEGGGVDQDDDDESISEEEDDDEEEEEENEQYWEKKFKKAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain