SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10795

Length: 314 nt

UniGene Fasta

>biog2_v2.0_unigene10795
TATGGGGCCATCTCACCTGATGGACAGACGATTGTCACAGGTGCAGGGGATGAAACACTCAGATTTTGGAGTATTTTTCCATCTCCAAAGTCACAGAGCGCCGTTCATGACTCTGGATTATGGTCTCTAGGACGAACTCATATTCGATGATATTTTTATTAGAGGAAACATATCTTTTCCCTCCATGAGAACATATTTCTTGTCCAAATCCATTTTATGCTGCTAGGTAATCCAATTGGGAACCATAAATCATAGGAATCCCTGTGAGGTGAAGGCAGGAATAAATTATGTCCTGAACTTATGTGTCTTCCAAC

Ace file of the UniGene biog2_v2.0_unigene10795

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2941	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	1.0e-11	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	protein	-	-	2.92502e-31	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	2.92502e-31	92%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	2.92502e-31	92%
Blast2go	heterotrimeric G-protein complex	GO:0005834	Cellular Component	2.92502e-31	92%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.92502e-31	92%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX8

Fln msg: your sequence is shorter than subject: 50 - 508

Fln protein: YGAISPDGQTIVTGAGDETLRFWSIFPSPKSQSAVHDSGLWSLGRTHIR*

Protein Length: 51

Fln nts: TATGGGGCCATCTCACCTGATGGACAGACGATTGTCACAGGTGCAGGGGATGAAACACTCAGATTTTGGAGTATTTTTCCATCTCCAAAGTCACAGAGCGCCGTTCATGACTCTGGATTATGGTCTCTAGGACGAACTCATATTCGATGA___TATTTTTATTAGAGGAAACATATCTTTTCCCTCCATGAGAACATATTTCTTGTCCAAATCCATTTTATGCTGCTAGGTAATCCAATTGGGAACCATAAATCATAGGAATCCCTGTGAGGTGAAGGCAGGAATAAATTATGTCCTGAACTTATGTGTCTTCCAAC

Fln Alignment:

biogeco2_mira_c7191___YGAISPDGQTIVTGAGDETLRFWSIFPSPKSQSAVHDSGLWSLGRTHIR
B8LPX8__________________YLAISPDGQTIVTGAGDETLRFWNIFPSPKSQSAVHDSGLWSLGRTQIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain