SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10794

Length: 396 nt

UniGene Fasta

>biog2_v2.0_unigene10794
TGATTTTGGATTTGCAAAACTCATTCCTGAAGGGGCAACACATGTTACCCCACGAGTGAAAGGAACACTAGGTTATCTTGCACCTGAATATGCTATGTGGGGAAAAGCTACTGAAGGTTGTGATGTTTACAGCTTTGGAATACTATTGCTTGAACTTGTAAGTGGTAAGAAACCAGTAGATAAGATGGACTCAAACACAAAGTACACGATTGTTGACTGGGCACTTCCGTTAGTTTTAGAAGGAAATATGATCAACTAGCTGATCCAAAGTTCCATGGAAAATACAACGAAGAGGAATTAAAGCGGGTAGTTCATGTGGCAATTATGTGTGCTCAAAGTGCCCCAGAGAAGAGACCGATGATGCTGGAAGTAGTGGACTTCCTCACAGGTGAGTCG

Ace file of the UniGene biog2_v2.0_unigene10794

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4479	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RV84_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	pti1-like tyrosine-protein kinase at3g15890-like	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	85%
Blast2go	receptor activity	GO:0004872	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ93

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 244 and 244, Distance to subject end: 35 aas, your sequence is shorter than subject: 132 - 350

Fln protein: DFGFAKLIPEGATHVTPRVKGTLGYLAPEYAMWGKATEGCDVYSFGILLLELVSGKKPVDKMDSNTKYTIVDWALPLVLExxYDQLADPKFHGKYNEEELKRVVHVAIMCAQSAPEKRPMMLEVVDFLTGES

Protein Length: 133

Fln nts: TGATTTTGGATTTGCAAAACTCATTCCTGAAGGGGCAACACATGTTACCCCACGAGTGAAAGGAACACTAGGTTATCTTGCACCTGAATATGCTATGTGGGGAAAAGCTACTGAAGGTTGTGATGTTTACAGCTTTGGAATACTATTGCTTGAACTTGTAAGTGGTAAGAAACCAGTAGATAAGATGGACTCAAACACAAAGTACACGATTGTTGACTGGGCACTTCCGTTAGTTTTAGAAxxxxxxTATGATCAACTAGCTGATCCAAAGTTCCATGGAAAATACAACGAAGAGGAATTAAAGCGGGTAGTTCATGTGGCAATTATGTGTGCTCAAAGTGCCCCAGAGAAGAGACCGATGATGCTGGAAGTAGTGGACTTCCTCACAGGTGAGTCG

Fln Alignment:

biogeco2_mira_c7190___DFGFAKLIPEGATHVTPRVKGTLGYLAPEYAMWGKATEGCDVYSFGILLLELVSGKKPVDKMDSNTKYTIVDWALPLVLEGKYDQLADPKFHGKYNEEELKRVVHVAIMCAQSAPEKRPMMLEVVDFLTGES
B8LQ93__________________DFGFAKLIPEGETHVTTGVKGTVGYLAPEYAMWRKASENCDVYSFGILLLELVSGKKPVDKMDSNTKHTIVDWALPLVLEGKYDQLADPKFHGKYNEEELKRVVHVAIMCAQNAPEKRPTMLEVVDFLTGES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain