SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10702

Length: 391 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10702
TTCACTGGTTAAGAATAAGAAGTTCAATATAAACACACAGGTGAGGGCTCGGAAAGTAAATGCAGGCGCAGTTGCGGTTGACAACAGTAGAAGTCAATTGCGGGCAGGTTCTATTTCAACATCACCGGCTTCCCATTTCCTCTGGGTCCATTTCTCAGTCGTCCCACTCTAAGGAAAGAGGTTGTAAAAGGAATGATATGGACATTTGAACAAGAGCAGGCTCTAGGCTTTAGCAGCGTTGCAACCAATATTCGCATGACAGTTATCAAACTCAAATCTGGAGGCCTCTGGGTTCACGCTCCAATTGCCCCCACAAAAGAGTGTATTCAGCTACTGAAAGAGTTGGAGGCTCCTGTTGAACACATTATTCTTCCCACTTTTGCATATGAAC

Ace file of the UniGene biog2_v2.0_unigene10702 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1842	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	86%
Blast2go	uncharacterized protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	circadian rhythm	GO:0007623	Biological Process	0.0	85%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: A9RUW3

Fln msg: Distance to subject end: 286 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 100 - 392

Fln protein: KSIAGRFYFNITGFPFPLGPFLSRPTLRKEVVKGMIWTFEQEQALGFSSVATNIRMTVIKLKSGGLWVHAPIAPTKECIQLLKELEAPVEHIILPTFAYE

Protein Length: 101

Fln nts: TTCACTGGTTAAGAATAAGAAGTTCAATATAAACACACAGGTGAGGGCTCGGAAAGTAAATGCAGGCGCAGTTGCGGTTGACAACAGTAGAAGTCAATTGCGGGCAGGTTCTATTTCAACATCACCGGCTTCCCATTTCCTCTGGGTCCATTTCTCAGTCGTCCCACTCTAAGGAAAGAGGTTGTAAAAGGAATGATATGGACATTTGAACAAGAGCAGGCTCTAGGCTTTAGCAGCGTTGCAACCAATATTCGCATGACAGTTATCAAACTCAAATCTGGAGGCCTCTGGGTTCACGCTCCAATTGCCCCCACAAAAGAGTGTATTCAGCTACTGAAAGAGTTGGAGGCTCCTGTTGAACACATTATTCTTCCCACTTTTGCATATGAAC

Fln Alignment:

biogeco2_mira_c7065___KSIAGRFYFNITGFPFPLGPFLSRPTLRKEVVKGMIWTFEQEQALGFSSVATNIRMTVIKLKSGGLWVHAPIAPTKECIQLLKELEAPVEHIILPTFAYE
A9RUW3__________________KGTPGRFYFNVTGFPFPLGPFLQRRTIRKEVEKGRIWTFEQEQALGFSSVATNTRMTVIMLKSGGLWVHAPIAPTEECIQLLKELEAPVEYIVLPTFAYE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain