SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10694

Length: 574 nt

UniGene Fasta

>biog2_v2.0_unigene10694
TCCAAGTGCTCCTACCAGTTCTTGGGGCATGGGTGAATTACGTAGCAGCTCATCATCCTGGTGCACTAGCATTTCTCATTATAGACTTTCTCCTTTCTTTGGAGTTGCAATGCTGACGGCATGCAGGCATCGCAGATTGCACGGAATATCACAACAAATGAAATAGCAAATGCAACCCGTTACAGTTATCTCAAGGGGCCTGGTGGTCATTTTCGGAACCCTTATAATCATGGTTTTCGAAAGAATTGCACGGATTTCCTTATCCAAGGATATAATAATGATGTAGAGATTACATGGCAGCCTTTGCAACCGGATGGAATTGGAATGGTTCAAATGAGTAGGCATGGGGCATCTTCAAATGCAACTGGTCCTGCTAATAGTGTAGACGTGCAGGGTCAGTCTTCCAGTGAGGTAACTCTGGAGACTGTAAAGTAATATTCACTCCTCACATTGTAACCACAACCATGGACAGACTGAGGGAGTTCCTTTAGGCCTTGGGCTTGGATTGGGACGGAGTAATTTGGCGCATGGACATCATAGTATTCAAGCTATATAAATCTATAATTACTTATCA

Ace file of the UniGene biog2_v2.0_unigene10694

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11392	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	S-acyltransferase TIP1 [Arabidopsis thaliana] sp\|Q52T38.1\|ZDH22_ARATH RecName: Full=S-acyltransferase TIP1; AltName: Full=Ankyrin repeat-containing S-palmitoyltransferase; AltName: Full=Palmitoyltransferase TIP1; AltName: Full=Protein TIP GROWTH DEFECTIVE	-	-	61%
FL-Next	sp=S-acyltransferase TIP1; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	s-acyltransferase tip1	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	cell tip growth	GO:0009932	Biological Process	75%
Blast2go	S-acyltransferase activity	GO:0016417	Molecular Function	75%
Blast2go	acyl binding	GO:0000035	Molecular Function	75%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	75%
Blast2go	membrane	GO:0016020	Cellular Component	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	0.0	-
Sma3	Ankyrin repeat	IPR002110	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q52T38

Fln msg: Separated hits, possible frame ERROR between 95 and 121, query STOP codon too far from subject stop. Distance to subject end: 33 aas, putative chimeric sequence, your sequence is shorter than subject: 145 - 620

Fln protein: QVLLPVLGAWVNYVAAHHPGALAFLIIDFLxxxxxxxxxxMQASQIARNITTNEIANATRYSYLKGPGGHFRNPYNHGFRKNCTDFLIQGYNNDVEITWQPLQPDGIGMVQMSRHGASSNATGPANSVDVQGQSSSEVTLETVK*

Protein Length: 146

Fln nts: TCCAAGTGCTCCTACCAGTTCTTGGGGCATGGGTGAATTACGTAGCAGCTCATCATCCTGGTGCACTAGCATTTCTCATTATAGACTTTCTCCTxxxxxxxxxxxxxxxxxxxxxxxxxxxCATGCAGGCATCGCAGATTGCACGGAATATCACAACAAATGAAATAGCAAATGCAACCCGTTACAGTTATCTCAAGGGGCCTGGTGGTCATTTTCGGAACCCTTATAATCATGGTTTTCGAAAGAATTGCACGGATTTCCTTATCCAAGGATATAATAATGATGTAGAGATTACATGGCAGCCTTTGCAACCGGATGGAATTGGAATGGTTCAAATGAGTAGGCATGGGGCATCTTCAAATGCAACTGGTCCTGCTAATAGTGTAGACGTGCAGGGTCAGTCTTCCAGTGAGGTAACTCTGGAGACTGTAAAGTAATATTCACTCCTCACATTGTAACCACAACCATGGACAGACTGAGGGAGTTCCTTTAGGCCTTGGGCTTGGATTGGGACGGAGTAATTTGGCGCATGGACATCATAGTATTCAAGCTATATAAATCTATAATTACTTATCA

Fln Alignment:

biogeco2_mira_c7050___GAWVNYVAAHHPGALAFLIIDFLLxxxxxxxxxMQASQIARNITTNEIANATRYSYLKGPGGHFRNPYNHGFRKNCTDFLIQGYNNDVEITWQPL--QPDGIGMVQMSRHGASSNATGPANSVDVQGQSSSE
Q52T38__________________GAWMSHVASNHVGALSFLLVEFCLxxxxxxxxxIQASQISRNITTNEMANALRYSYLRGPGGRFRNPYDLGCRRNCSDFLVKGYNEDIECHEEDATQRPEGISMMQMQRNPNLQNGNGHV-AIDVNPTHNSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain