SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10690

Length: 408 nt

UniGene Fasta

>biog2_v2.0_unigene10690
ATGGGGGAGGATTTGGAAAAGTTGTGCAGAAAGACCTGGAAATTCATAGACCGCCTATAGAACCAGTGGGCTCTTTCCATACAGGCGGCTCAAATTCTCACTATGGACACGGTGGAGGATATGGAGGTCATGGGGGTTCTCACCGACATGGTAAAGAATCTAGTCGGAAACGCTATAGGTCCGAAGATGATCGGCCAACAACAGATGTATCGAAGAGATCTAGGCAGGAAAAGAATCCTCGTTTTCGAGAAAGTGGTGACTCTGATGAAGATGAGAGCGGAAGACATTAGAGATCCTATTACTATGAAGATATTACTTTGTAAATTCATTACTACCTTAAGAAAGAGCTATATATTTTAAGTGCTACCTGAGGTCTTCCCAGGGGTGTCCAGTTTTGTTGCATAAGCC

Ace file of the UniGene biog2_v2.0_unigene10690

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10755	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Nuclear cap-binding protein subunit 2 n=3 Tax=Andropogoneae RepID=B6TL33_MAIZE	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	nuclear cap-binding protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	70%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Helix-hairpin-helix motif	IPR000445	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Endonuclease III, conserved site-2	IPR004036	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZD8

Fln msg: your sequence is shorter than subject: 96 - 235

Fln protein: GGGFGKVVQKDLEIHRPPIEPVGSFHTGGSNSHYGHGGGYGGHGGSHRHGKESSRKRYRSEDDRPTTDVSKRSRQEKNPRFRESGDSDEDESGRH*

Protein Length: 97

Fln nts: ATGGGGGAGGATTTGGAAAAGTTGTGCAGAAAGACCTGGAAATTCATAGACCGCCTATAGAACCAGTGGGCTCTTTCCATACAGGCGGCTCAAATTCTCACTATGGACACGGTGGAGGATATGGAGGTCATGGGGGTTCTCACCGACATGGTAAAGAATCTAGTCGGAAACGCTATAGGTCCGAAGATGATCGGCCAACAACAGATGTATCGAAGAGATCTAGGCAGGAAAAGAATCCTCGTTTTCGAGAAAGTGGTGACTCTGATGAAGATGAGAGCGGAAGACATTAG___AGATCCTATTACTATGAAGATATTACTTTGTAAATTCATTACTACCTTAAGAAAGAGCTATATATTTTAAGTGCTACCTGAGGTCTTCCCAGGGGTGTCCAGTTTTGTTGCATAAGCC

Fln Alignment:

biogeco2_mira_c7044___GGFGKVVQKDLEIHRPPIEPVGSFHT-XXXXXXXXXXXXXXXXXXXXXXXXXXXRKRYRSEDDRPTTDVSKRSRQEKNPRFRESGDSDEDESGRH
A9NZD8__________________GGFGKVVQKDLEVHRPPIEPVGSFHSGSSNSHYGGHGGGYGGHGGSHRHGRESGRKRYRSEDDRPPTDVSKRSRQEKNPRFRERGDSDEDESGRH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain