SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10688

Length: 405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10688
GAGGCATCAAGACCACCTTTATTTCCACAGCAATCAAAACTGGCTGGAATACAAGTTTCAGCTTGCTGCTCAACTAGGCTGTATGGACAGAAATCTGGGTTTGGCTTAAAGATTCAGAGACACTGTTTGAAGGCCACAGTATCCAGACCATGTCTTCGGCAATCCCTTTCTGTTACAAAGTGTGCAATGGATGCTTCTTTTGGTGGTGCATCACCAGTTTTTCCCAGAATCAATGTTAAAGACTCCTACAAGCGGCTTGGAATCAGCAGGGAGGCTTCTGAAGAGGAGATTCAGGCAGCAAGGAATTTTCTGATTGAACAGTATGCAGGTCATAAGCCAAGTGTGGATGCAATTGAATCTGCATATGATAAAATATTATTGGAAAGCTTTAGAGCAAGGAGAAGG

Ace file of the UniGene biog2_v2.0_unigene10688 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1886	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	DUF3353 domain containing protein	-	-	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	uncharacterized protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	0.0	76%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	0.0	76%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRG3

Fln msg: Distance to subject end: 134 aas, atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning, your sequence is shorter than subject: 135 - 287

Fln protein: EASRPPLFPQQSKLAGIQVSACCSTRLYGQKSGFGLKIQRHCLKATVSRPCLRQSLSVTKCAMDASFGGASPVFPRINVKDSYKRLGISREASEEEIQAARNFLIEQYAGHKPSVDAIESAYDKILLESFRARRR

Protein Length: 136

Fln nts: GAGGCATCAAGACCACCTTTATTTCCACAGCAATCAAAACTGGCTGGAATACAAGTTTCAGCTTGCTGCTCAACTAGGCTGTATGGACAGAAATCTGGGTTTGGCTTAAAGATTCAGAGACACTGTTTGAAGGCCACAGTATCCAGACCATGTCTTCGGCAATCCCTTTCTGTTACAAAGTGTGCAATGGATGCTTCTTTTGGTGGTGCATCACCAGTTTTTCCCAGAATCAATGTTAAAGACTCCTACAAGCGGCTTGGAATCAGCAGGGAGGCTTCTGAAGAGGAGATTCAGGCAGCAAGGAATTTTCTGATTGAACAGTATGCAGGTCATAAGCCAAGTGTGGATGCAATTGAATCTGCATATGATAAAATATTATTGGAAAGCTTTAGAGCAAGGAGAAGG

Fln Alignment:

biogeco2_mira_c7041___EASRPPLFPQQSKLAGIQVSACCSTRLYGQKSGFGLKIQRHCLKATVSRPCLRQSLSVTKCAMDASFGG-------ASPVFPRINVKDSYKRLGISREASEEEIQAARNFLIEQYAGHKPSVDAIESAYDKILLESFRARRR
C0PRG3__________________EVSRPSLLPQKSKLAGIQVSACWSTRLYGQNAGFHLKIQRYCLKARVSRPCLRQSLSVTRCAMDASFGGKYDDLSGSSPVFPRINVKDSYKRLGISREASEEEIQAARNFLIEQYAGHKPSVDAIESAYDKILLESLRARRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain