SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10657

Length: 352 nt

UniGene Fasta

>biog2_v2.0_unigene10657
ACCAGGAGTACTACATCAGGCATAATGATGGTTGCCCCGTGTATTCAGAAGCAAAGAAGCAGCGTGTGATTCATTGTTTGGAGGCTGCCATTAGACAAAGAACATCTGAGGGTATGCGACTGGAACTCTGCACCAACGACCGTGTTGGGCTTCTGTCGGAGGTGATTCACATATTTAGAGAAAATGGGATGTCAGTTACAGAAGCAGAGGTGTCAACGCGGGGTGATAAGGTAGCTGATGTGTTCTATGTGACTGATGTAGCTGTAAACCCCGTTGATGCCAGGACAGTAGAAGCTGTTCGCCAAGAAATTGGACTAACAATCTTGCAAGTAAAAGACGACTGTATGCATAC

Ace file of the UniGene biog2_v2.0_unigene10657

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15195	2/3
SustainPine v2.0	sp_v2.0_unigene34855	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	ACT domain-containing protein [Arabidopsis thaliana] gb\|AEE34879.1\| ACT domain-containing protein [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	act domain-containing protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	76%
Blast2go	regulation of asymmetric cell division	GO:0009786	Biological Process	76%
Blast2go	lateral root formation	GO:0010311	Biological Process	76%
Blast2go	root cap development	GO:0048829	Biological Process	76%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	76%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	76%
Blast2go	endocytic vesicle	GO:0030139	Cellular Component	76%
Blast2go	cell surface	GO:0009986	Cellular Component	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Protein-PII uridylyltransferase	IPR010043	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADB5

Fln msg: Distance to subject end: 35 aas, your sequence is shorter than subject: 116 - 439

Fln protein: QEYYIRHNDGCPVYSEAKKQRVIHCLEAAIRQRTSEGMRLELCTNDRVGLLSEVIHIFRENGMSVTEAEVSTRGDKVADVFYVTDVAVNPVDARTVEAVRQEIGLTILQVKDDCMH

Protein Length: 117

Fln nts: ACCAGGAGTACTACATCAGGCATAATGATGGTTGCCCCGTGTATTCAGAAGCAAAGAAGCAGCGTGTGATTCATTGTTTGGAGGCTGCCATTAGACAAAGAACATCTGAGGGTATGCGACTGGAACTCTGCACCAACGACCGTGTTGGGCTTCTGTCGGAGGTGATTCACATATTTAGAGAAAATGGGATGTCAGTTACAGAAGCAGAGGTGTCAACGCGGGGTGATAAGGTAGCTGATGTGTTCTATGTGACTGATGTAGCTGTAAACCCCGTTGATGCCAGGACAGTAGAAGCTGTTCGCCAAGAAATTGGACTAACAATCTTGCAAGTAAAAGACGACTGTATGCATAC

Fln Alignment:

biogeco2_mira_c6988___QEYYIRHNDGCPVYSEAKKQRVIHCLEAAIRQRTSEGMRLELCTNDRVGLLSEVIHIFRENGMSVTEAEVSTRGDKVADVFYVTDVAVNPVDARTVEAVRQEIGLTILQVKDDCM
D5ADB5__________________QEYYIRHTDGCPVNSEAERQRVIQCLEAAIRRRASEGVRLELCTNDRVGLLSDVTRIFRENGMSVTRAEVSTRGDKAVNVFYVTDAAGNPVDPKTVEAVRREIGLTILQVKDNCM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
201	33		66		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain