SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10637

Length: 327 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10637
ATGGATAACGAGGAATTTGATGGAGTCGTGTTGGCTTATTTTGACCTTAAAATCTGCGATTGGACTGCGAAGATTCTTAATGGGCTGTCTCCCTATCTATCTTTGAAATTAAAGGCAAAATTGCTTCTTTTCTCTCCCAAACCAGGGATGCTTCTTGAAGGCAAGGTGAATAAGGTTGAAAAGGACTACATTGGAGTTATTGTATTGGGAATCTTCAATGCAGCCATTGCATGCACAGATATACGTGAAGAATTTTGTTATCAAGAAAATGTTGATGGCATTCCCATATGGGCAAGTATGTCAGATAACCACATGATAAGACTTGGG

Ace file of the UniGene biog2_v2.0_unigene10637 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20868	1/2
SustainPine v2.0	sp_v2.0_unigene33700	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase [Arabidopsis thaliana] ref\|NP_974148.1\| DNA-directed RNA polymerase [Arabidopsis thaliana] gb\|AAN12946.1\| unknown protein [Arabidopsis thaliana] gb\|AEE35743.1\| DNA-directed RNA polymerase [Arabidopsis thaliana] gb\|AEE35744.1\| D	-	-	8.0e-23	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	dna-directed rna polymerase	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA polymerase Rpb7, N-terminal	IPR005576	-	0.0	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX1

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 109 - 263

Fln protein: MDNEEFDGVVLAYFDLKICDWTAKILNGLSPYLSLKLKAKLLLFSPKPGMLLEGKVNKVEKDYIGVIVLGIFNAAIACTDIREEFCYQENVDGIPIWASMSDNHMIRLG

Protein Length: 110

Fln nts: ATGGATAACGAGGAATTTGATGGAGTCGTGTTGGCTTATTTTGACCTTAAAATCTGCGATTGGACTGCGAAGATTCTTAATGGGCTGTCTCCCTATCTATCTTTGAAATTAAAGGCAAAATTGCTTCTTTTCTCTCCCAAACCAGGGATGCTTCTTGAAGGCAAGGTGAATAAGGTTGAAAAGGACTACATTGGAGTTATTGTATTGGGAATCTTCAATGCAGCCATTGCATGCACAGATATACGTGAAGAATTTTGTTATCAAGAAAATGTTGATGGCATTCCCATATGGGCAAGTATGTCAGATAACCACATGATAAGACTTGGG

Fln Alignment:

biogeco2_mira_c6957___NEEFDGVVLAYFDLKICDWTAKILNGXXXXXXXXXXXXXXXXXXXPGMLLEGKVNKVEKDYIGVIVLGIFNAAIACTDIREEFCYQENVDGIPIWASMSDNHMIRLG
B8LKX1__________________NEEFDGVVLAYFDLKICNWTAKILNGLSPYLSLKLKAKLLLFSPKPGMLLEGKVNKVEKDYIGVIVLGIFNAAIACTDIREEFCYQENVDGIPIWASTSDNHVIRLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain