SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10600

Length: 310 nt

UniGene Fasta

>biog2_v2.0_unigene10600
TTCTGAAATAGTTGGTAGTCCATACTATATGGCACCAGAGGTTCTGAAGCGTAATTATGGACCTGAGATCGACGTGTGGAGTGCTGGTGTTATCCTGTATATTTTATTGTGTGGCGTGCCACCATTTTGGGCTGAATCAGAGCAAGGAGTTGCTCAGGCGATTCTTCGTGGTTTTGTAGACTTCAAAAGAGAGCCATGGCCAAAAATTTCTGAAGCTGCAAAAAGTCTTGTACGCCAGATGCTGGAGCCTGATCCCAAGCTACGGTTAACAGCTCAGCAAGTACTTGAGCATCCTTGGTTACAGAATGCC

Ace file of the UniGene biog2_v2.0_unigene10600

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5125	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium dependent protein kinase 23 n=4 Tax=rosids RepID=B9HCX6_POPTR	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	calcium-dependent protein kinase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium/calmodulin-dependent protein kinase.	EC:2.7.11.17	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	85%
Blast2go	calmodulin-dependent protein kinase activity	GO:0004683	Molecular Function	85%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ38

Fln msg: Distance to subject end: 216 aas, your sequence is shorter than subject: 103 - 529

Fln protein: SEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISEAAKSLVRQMLEPDPKLRLTAQQVLEHPWLQNA

Protein Length: 104

Fln nts: TTCTGAAATAGTTGGTAGTCCATACTATATGGCACCAGAGGTTCTGAAGCGTAATTATGGACCTGAGATCGACGTGTGGAGTGCTGGTGTTATCCTGTATATTTTATTGTGTGGCGTGCCACCATTTTGGGCTGAATCAGAGCAAGGAGTTGCTCAGGCGATTCTTCGTGGTTTTGTAGACTTCAAAAGAGAGCCATGGCCAAAAATTTCTGAAGCTGCAAAAAGTCTTGTACGCCAGATGCTGGAGCCTGATCCCAAGCTACGGTTAACAGCTCAGCAAGTACTTGAGCATCCTTGGTTACAGAATGCC

Fln Alignment:

biogeco2_mira_c6894___SEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISEAAKSLVRQMLEPDPKLRLTAQQVLEHPWLQNA
C0PQ38__________________SEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISETAKSLVRQMLEPDPKRRLTAQQVIEHPWLQNA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
90		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain