SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10595

Length: 566 nt

UniGene Fasta

>biog2_v2.0_unigene10595
CTGAATCCTTTGTTTAAGGTGAGCTTTGTCAAAGTTGTCTCGGACTTCCCTCGTACAACATCAAACAAAATAATGAGAAGAGTTTTACGAGATCGGCTTAAGCAGGAATTATCTATTCCCAGAAGCAAGTTGTGATTGGAACAAATGTTCCTGTGCTTCCTATTGTTTCTTTGATTTTATTCAAGTAAAATTTATAGTGAACACTTGGACTTTATCGCATTCAAGTTTAAAAGTTGGCATTACTTATTTTCTAGAAGCTTCGCTGTTTCCCCAGAACACCATTGACTTTTGAAAGCATTAGCATGCCTGTTTACATCGGCAAGCTTGCCATTGTTTTGCCAAAGCATAAGTATTACGAGAAAGGCCTGTTTATGGGTATCTTACAACTTGAATCTCAGCAAAGGCGCATATGAAGGAGTTGGTTGGAAGGCTGTCTGACAAGAAAGTCTCGTAAATTAGAATTATTGTCATTAAATGTTGTCAAGGTGGAATGTTGCAATGATGATGTGTTATGCTTACCAAATTTATGCATGAAATACATTGAGCAGTGTGTTTGAATGTTAGAA

Ace file of the UniGene biog2_v2.0_unigene10595

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene233	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	acyl-activating enzyme 18 [Arabidopsis thaliana] gb\|AEE33226.1\| acyl-activating enzyme 18 [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	acyl-activating enzyme 18	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetate--CoA ligase.	EC:6.2.1.1	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	79%
Blast2go	Pyruvate metabolism	00620	79%
Blast2go	Propanoate metabolism	00640	79%
Blast2go	Methane metabolism	00680	79%
Blast2go	Carbon fixation pathways in prokaryotes	00720	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	Identity
Blast2go	auxin metabolic process	GO:0009850	Biological Process	79%
Blast2go	acetate-CoA ligase activity	GO:0003987	Molecular Function	79%
Blast2go	peroxisome	GO:0005777	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-
Sma3	Mediator complex, subunit Med13	IPR009401	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR72

Fln msg: your sequence is shorter than subject: 45 - 734

Fln protein: LNPLFKVSFVKVVSDFPRTTSNKIMRRVLRDRLKQELSIPRSKL*

Protein Length: 46

Fln nts: CTGAATCCTTTGTTTAAGGTGAGCTTTGTCAAAGTTGTCTCGGACTTCCCTCGTACAACATCAAACAAAATAATGAGAAGAGTTTTACGAGATCGGCTTAAGCAGGAATTATCTATTCCCAGAAGCAAGTTGTGA___TTGGAACAAATGTTCCTGTGCTTCCTATTGTTTCTTTGATTTTATTCAAGTAAAATTTATAGTGAACACTTGGACTTTATCGCATTCAAGTTTAAAAGTTGGCATTACTTATTTTCTAGAAGCTTCGCTGTTTCCCCAGAACACCATTGACTTTTGAAAGCATTAGCATGCCTGTTTACATCGGCAAGCTTGCCATTGTTTTGCCAAAGCATAAGTATTACGAGAAAGGCCTGTTTATGGGTATCTTACAACTTGAATCTCAGCAAAGGCGCATATGAAGGAGTTGGTTGGAAGGCTGTCTGACAAGAAAGTCTCGTAAATTAGAATTATTGTCATTAAATGTTGTCAAGGTGGAATGTTGCAATGATGATGTGTTATGCTTACCAAATTTATGCATGAAATACATTGAGCAGTGTGTTTGAATGTTAGAA

Fln Alignment:

biogeco2_mira_c6886___LNPLXXXXXXXXXXDFPRTTSNKIMRRVLRDRLKQELSIPRSKL
C0PR72__________________LNPLFKVSFVKVVSDFPRTTSNKIMRRVLRDQLKQELSIPRSKL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
359		33		66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain