SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10542

Length: 315 nt

UniGene Fasta

>biog2_v2.0_unigene10542
ATTCAGGTCCTTGTGTTGAAACTTGCCGCATTGTTACTACGAAGTCTTGCCGATGCGGCAGCTTGAAGAAACAGGTTCCTTGCTACCAAGATTTAGTTTGTGAAAGAAAATGTCAGCGAGTACGTGATTGTGGGCGCCATGCTTGCAGACGGCGATGTTGTGATGGGGATTGCCCTCCTTGCGCGGAGATTTGTGGCAGAAAGCTTCGATGTAACAATCACAAATGTCCTGCTCCCTGTCACAGAGGTAATTGTGCACCTTGCCCAGTTACAGTTCGCATTTCTTGTGCATGTGGAGAAACATCATATGAGGTTC

Ace file of the UniGene biog2_v2.0_unigene10542

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33277	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	transcription factor-like protein [Arabidopsis thaliana] gb\|AED90905.1\| transcription factor-like protein [Arabidopsis thaliana]	-	-	61%
FL-Next	sp=NF-X1-type zinc finger protein NFXL2; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Blast2go	nuclear transcription x-box	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	75%
Blast2go	circadian rhythm	GO:0007623	Biological Process	75%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	75%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FFK8

Fln msg: Distance to subject end: 412 aas, your sequence is shorter than subject: 104 - 883

Fln protein: SGPCVETCRIVTTKSCRCGSLKKQVPCYQDLVCERKCQRVRDCGRHACRRRCCDGDCPPCAEICGRKLRCNNHKCPAPCHRGNCAPCPVTVRISCACGETSYEV

Protein Length: 105

Fln nts: ATTCAGGTCCTTGTGTTGAAACTTGCCGCATTGTTACTACGAAGTCTTGCCGATGCGGCAGCTTGAAGAAACAGGTTCCTTGCTACCAAGATTTAGTTTGTGAAAGAAAATGTCAGCGAGTACGTGATTGTGGGCGCCATGCTTGCAGACGGCGATGTTGTGATGGGGATTGCCCTCCTTGCGCGGAGATTTGTGGCAGAAAGCTTCGATGTAACAATCACAAATGTCCTGCTCCCTGTCACAGAGGTAATTGTGCACCTTGCCCAGTTACAGTTCGCATTTCTTGTGCATGTGGAGAAACATCATATGAGGTTC

Fln Alignment:

biogeco2_mira_c6792___GPCVETCRIVTTKSCRCGSLKKQVPCYQDLVCERKCQXXXXXXXXXXXXXXXXXXXXXXXEICGRKLRCNNHKCPAPCHRGNCAPCPVTVRISCACGETSYEV
Q9FFK8__________________GPCLETCRIVVTKSCRCGVTKKQVPCHQELACERKCQRVRDCARHACRRRCCDGECPPCSEICGKKLRCRNHKCQSPCHQGPCAPCPIMVTISCACGETHFEV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain