SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10516

Length: 277 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10516
TTGCCAAAGATTATCTCTATTTCTAGGTATTTATGGAAGCCCGAATCTGGTTTATTGTAGCAACAGCAGCAGCATAAGGACATGGCTTGTGATGGCATACCTTTCCCTTCCTCTAATAATGAGGAACAGTCTGCAAAATCTATGGCTGAGACGATGTCTGTTGGGCTCCCAAAAGGTGCTGCATCTCTAACCAGCGATGAATGTGAAAATACACGCAAACGATCAATGAGTTTTTCCTCCCTCTCAAGAGCCATGGACCTGTCTGACCATGACAATG

Ace file of the UniGene biog2_v2.0_unigene10516 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene256	2/3
SustainPine v2.0	sp_v2.0_unigene35127	1/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox-leucine zipper-like protein n=2 Tax=Picea RepID=Q3HRT1_PICGL	-	-	3.9937e-43	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	transcription factor	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	66%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	66%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	66%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	66%
Blast2go	nucleus	GO:0005634	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3		IPR012287	-	-
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVG4

Fln msg: Distance to subject end: 288 aas, your sequence is shorter than subject: 65 - 360

Fln protein: MACDGIPFPSSNNEEQSAKSMAETMSVGLPKGAASLTSDECENTRKRSMSFSSLSRAMDLSDHDN

Protein Length: 66

Fln nts: TTGCCAAAGATTATCTCTATTTCTAGGTATTTATGGAAGCCCGAATCTGGTTTATTGTAGCAACAGCAGCAGCATAAGGAC_-_ATGGCTTGTGATGGCATACCTTTCCCTTCCTCTAATAATGAGGAACAGTCTGCAAAATCTATGGCTGAGACGATGTCTGTTGGGCTCCCAAAAGGTGCTGCATCTCTAACCAGCGATGAATGTGAAAATACACGCAAACGATCAATGAGTTTTTCCTCCCTCTCAAGAGCCATGGACCTGTCTGACCATGACAATG

Fln Alignment:

biogeco2_mira_c6743___MACDGIPFPSSNN----EEQSAKSMAETM----SVGLPKGAASLTSDECENTRKRSMSFSSLSRAMDLSDHD
A9NVG4__________________MSCDGSPYRYANTAMTTEDYSANVMASMIASCTSVGV-QGAATLTRCECENKRKSSMSLSAYSGAMDLSDYD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain