SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10493

Length: 424 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10493
CTAACTGTTAGTAGCAGGCCCCTCATCCCTGTTCCATTCCCTGCTCCTAGTGGTGATATCACTCTGCTCATAGGTGACTGGTATAAGACCAATCACACAATCCTTAGGAGAACACTTGACATGGGCGGATCGCTTGGTAAACCTGATGCTGTTATCATTAATGGCCGTGGGCCAGCAAATGGTGCAACTATCACAGTGGATCAAGGAAAACCTACCGGCTCCGGATTTCAAATGTAGGATTGTCATCCTCTTTGAACTTCAGGATCCAAGGTCATAAATTGAAGCTTGTGGAGGTGGAAGGATCTCACACTGTTCAAAATGTGTATGATTCTCTTGACATTCATGTCGGCCAGTCATACTCTGTTCTGGTCACTGCAAATCAGGCATCTCAGGACTACTACATGGTTGCATCTACTCGTTTTAC

Ace file of the UniGene biog2_v2.0_unigene10493 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24035	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Multicopper oxidase, type 1 [Medicago truncatula]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	l-ascorbate oxidase-like protein	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Cupredoxin	IPR008972	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRP4

Fln msg: Overlapping hits, possible frame ERROR between 210 and 207, Distance to subject end: 259 aas, your sequence is shorter than subject: 141 - 542

Fln protein: LTVSSRPLIPVPFPAPSGDITLLIGDWYKTNHTILRRTLDMGGSLGKPDAVIINGRGPANGATITVDQxxxYRLRISNVGLSSSLNFRIQGHKLKLVEVEGSHTVQNVYDSLDIHVGQSYSVLVTANQASQDYYMVASTRF

Protein Length: 142

Fln nts: CTAACTGTTAGTAGCAGGCCCCTCATCCCTGTTCCATTCCCTGCTCCTAGTGGTGATATCACTCTGCTCATAGGTGACTGGTATAAGACCAATCACACAATCCTTAGGAGAACACTTGACATGGGCGGATCGCTTGGTAAACCTGATGCTGTTATCATTAATGGCCGTGGGCCAGCAAATGGTGCAACTATCACAGTGGATCAAxxxxxxxxxTACCGGCTCCGGATTTCAAATGTAGGATTGTCATCCTCTTTGAACTTCAGGATCCAAGGTCATAAATTGAAGCTTGTGGAGGTGGAAGGATCTCACACTGTTCAAAATGTGTATGATTCTCTTGACATTCATGTCGGCCAGTCATACTCTGTTCTGGTCACTGCAAATCAGGCATCTCAGGACTACTACATGGTTGCATCTACTCGTTTTAC

Fln Alignment:

biogeco2_mira_c6713___LTVSSRPLIPVPFPAPSGDITLLIGDWYKTNHTILRRTLDMGGSLGKPDAVIINGRGPANGATITVDQGxTYRLRISNVGLSSSLNFRIQGHKLKLVEVEGSHTVQNVYDSLDIHVGQSYSVLVTANQASQDYYMVASTRF
B8LRP4__________________LSVVSRPLIPVPFPAPNGDITLLIGDWYKANHTILRRTLDMGRSLGKPDAVVINGRGPASGATITVDQGxTYRLRISNVGLSSSLNFRIQGHKLKLVEVEGSHTVQNVYDSLDIHVGQTYSVLVTTDQPSQDYYMVASTRF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain