SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10484

Length: 369 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10484
TTGAAAATCTTTCAGGAGTTCAACTGACGGGACAGATCAGAGAGCAAGAGCATATCTATGAGGAACGCTTTCAGATGACTTTTAATCTAACTGACAAGGTTGATGAGGATGCTATGGTAGTTGGAAGGGCTGCTATTAGCAGTTTGATAGGAGGCATTGGATATTATTTGGCCAATCACGGATTGCCATTCCAGAGGAATCCAAAGATGGAGTCAACAATAATTTTGCGTTATACTGGCCAGCAGCTCTTTATACAGCTGTTCCTAGTCGTTCCTTCTTTCCACGAGGTTTTCTATGGGATGAAGGCTTTCATCAACTTTTAATATGGCGGTGGGACCTTCACATATGCTTGGATATCATTGGACATTG

Ace file of the UniGene biog2_v2.0_unigene10484 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26493	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	glucosidase 1 [Arabidopsis thaliana] gb\|AEE34653.1\| glucosidase 1 [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	43%
Blast2go	mannosyl-oligosaccharide glucosidase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.2.1.2-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	73%
Blast2go	pollen sperm cell differentiation	GO:0048235	Biological Process	73%
Blast2go	alpha-glucosidase activity	GO:0004558	Molecular Function	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 63	IPR004888	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F2E0B6

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 167 and 167, Distance to subject end: 383 aas, your sequence is shorter than subject: 122 - 869

Fln protein: ENLSGVQLTGQIREQEHIYEERFQMTFNLTDKVDEDAMVVGRAAISSLIGGIGYxxGQSRIAIPEESKDGVNNNFALYWPAALYTAVPSRSFFPRGFLWDEGFHQLLIWRWDLHICLDIIGH

Protein Length: 123

Fln nts: TTGAAAATCTTTCAGGAGTTCAACTGACGGGACAGATCAGAGAGCAAGAGCATATCTATGAGGAACGCTTTCAGATGACTTTTAATCTAACTGACAAGGTTGATGAGGATGCTATGGTAGTTGGAAGGGCTGCTATTAGCAGTTTGATAGGAGGCATTGGATATxxxxxxGGCCAATCACGGATTGCCATTCCAGAGGAATCCAAAGATGGAGTCAACAATAATTTTGCGTTATACTGGCCAGCAGCTCTTTATACAGCTGTTCCTAGTCGTTCCTTCTTTCCACGAGGTTTTCTATGGGATGAAGGCTTTCATCAACTTTTAATATGGCGGTGGGACCTTCACATATGCTTGGATATCATTGGACATTG

Fln Alignment:

biogeco2_mira_c6696___LSGVQLTGQIREQEHIYEERFQMTFNLTDKVDEDAMVVGRAAISSLIGGIGYYFGQSRIAIPEESKDGVNNNFALYWPAALYTAVPSRSFFPRGFLWDEGFHQLLIWRWDLHICLDIIGH
F2E0B6__________________LTGPMLSTRLESKQKEFEERYDQIFNLNNKIVSKELSVGRAALSSLLGGIGYFYGQSKIALPKGFSQKNGDKYIPYWPAALYTAVPSRSFFPRGFLWDEGFHQLVICRWDAHISMDIIGH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain