SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10477

Length: 605 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene10477 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17696	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	V-type H+-transporting ATPase subunit I [Arabidopsis thaliana] gb\|AAL31187.1\| AT4g39080/F19H22_180 [Arabidopsis thaliana] gb\|AAO11531.1\| At4g39080/F19H22_180 [Arabidopsis thaliana] dbj\|BAE99335.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE87015.1\|	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	75%
Blast2go	vacuolar proton	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to salt stress	GO:0071472	Biological Process	86%
Blast2go	cellular response to nutrient levels	GO:0031669	Biological Process	86%
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	86%
Blast2go	hydrogen-translocating pyrophosphatase activity	GO:0009678	Molecular Function	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0/A0 complex, 116kDa subunit	IPR002490	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
217		33		66	0.997452
218	33			66	0.997452
219		33		66	0.997452
222		66	33		0.997452
225	33	66			0.997452
230	33		66		0.997452
231	33			66	0.997452
232			33	66	0.997452
321	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain