SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10473

Length: 550 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10473
CAATTGAGTCAATTCACAAGCACAATTACATTCACAGGGACATCAAACCAGATAATTTATTACTTGATAGATATGGACACATGAAGCTTTCAGATTTTGGTTTATGTAAACCATTGGACTGCACTAATCTACCCATTCTCCATGAAAATGACTTCACCGCTGGAAAAACTCTAAAAGATGTTTTGGATATGGATGGGCGTTTGAACACATCAACCACACCAAAGCGCACTCAACAGGAGCAGCTTTCACATTGGCAAAGGAACAGGCGCATGCTGGCTTATTCAACTGTTGGTACACCAGACTACATTGCCCCTGAAGTATTATTGAAGAAAGGCTATGGAAAGGAGTGCGATTGGTGGTCACTTGGAGCGATTATGTATGAAATGCTTATAGGTTATCCACCTTTTTATTCTGAAGAGCCAATGTCAACTTGTAGGAAGATAGTGAACTGGAGAACTCACCTTAAATTCCAGAAGAAGCAAAGTTGTCAGCAGAGGCCAAAGATCTTATCAGTAAACTTCTTTGTAATGTAGAGCAGAGGCTTGGAACA

Ace file of the UniGene biog2_v2.0_unigene10473 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2573	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase [Triticum aestivum] dbj\|BAD19067.1\| protein kinase [Triticum aestivum] dbj\|BAD21354.1\| WNdr1A-like protein kinase [Triticum monococcum subsp. aegilopoides] dbj\|BAD21355.1\| WNdr1B-like protein kinase [Aegilops speltoides] dbj\|BAD21356.1\| WNd	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	protein kinase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	88%

Source	InterPros	Term	Type	Identity
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protein kinase, C-terminal	IPR017892	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 53 aas, your sequence is shorter than subject: 177 - 385

Fln protein: IESIHKHNYIHRDIKPDNLLLDRYGHMKLSDFGLCKPLDCTNLPILHENDFTAGKTLKDVLDMDGRLNTSTTPKRTQQEQLSHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGKECDWWSLGAIMYEMLIGYPPFYSEEPMSTCRKIVNWRTHLKFQKKQSCQQRPKILSVNFFVM*

Protein Length: 178

Fln nts: CAATTGAGTCAATTCACAAGCACAATTACATTCACAGGGACATCAAACCAGATAATTTATTACTTGATAGATATGGACACATGAAGCTTTCAGATTTTGGTTTATGTAAACCATTGGACTGCACTAATCTACCCATTCTCCATGAAAATGACTTCACCGCTGGAAAAACTCTAAAAGATGTTTTGGATATGGATGGGCGTTTGAACACATCAACCACACCAAAGCGCACTCAACAGGAGCAGCTTTCACATTGGCAAAGGAACAGGCGCATGCTGGCTTATTCAACTGTTGGTACACCAGACTACATTGCCCCTGAAGTATTATTGAAGAAAGGCTATGGAAAGGAGTGCGATTGGTGGTCACTTGGAGCGATTATGTATGAAATGCTTATAGGTTATCCACCTTTTTATTCTGAAGAGCCAATGTCAACTTGTAGGAAGATAGTGAACTGGAGAACTCACCTTAAATTCCAGAAGAAGCAAAGTTGTCAGCAGAGGCCAAAGATCTTATCAGTAAACTTCTTTGTAATGTAGAGCAGAGGCTTGGAACA

Fln Alignment:

biogeco2_mira_c6681___IESIHKHNYIHRDIKPDNLLLDRYGHMKLSDF----------------------GLCKPLDCTNLPILHENDFTAGKTLKDVLDMDGRLNTST--TPKRTQQEQLSHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGKECDWWSLGAIMYEMLIGYPPF
A9NPF9__________________LEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLMINNSQESRAKDSYRDQNGSCKKKTKSFLAKLNPGHVGA----KDCMNASAMITTKQDDSAKETSFCHLDGRKESVYEQAHSFVGTEEYVAPEILWGKGHGIAVDWWAFGVLLYEMVYGKTPF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain