SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10430

Length: 243 nt

UniGene Fasta

>biog2_v2.0_unigene10430
AAACATTTAAAGCTGGGGCTTCATTGTTTGGTGTTGCCGACTTGTCACTATTGAAAGCTGATACACACAAGTTTGAATCATATTACACTGACAGTCTTGTTGGGAAGGATGAATCATTACTGTATGCACGATCACCCATCAATTATGTTGATAGGCTTTCATGTCCAATAATCTTATTTCAAGGATTAGAAGACAAGGTTGTCCCTCCTGAACAAGCACGTAAGATCTATGCAGCAGTGAAGG

Ace file of the UniGene biog2_v2.0_unigene10430

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6030	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	acylamino-acid-releasing enzyme, putative (EC:3.4.19.1)	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	acyl-peptide hydrolase-like protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	78%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	-
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWZ2

Fln msg: Distance to subject end: 57 aas, your sequence is shorter than subject: 80 - 721

Fln protein: TFKAGASLFGVADLSLLKADTHKFESYYTDSLVGKDESLLYARSPINYVDRLSCPIILFQGLEDKVVPPEQARKIYAAVK

Protein Length: 81

Fln nts: AAACATTTAAAGCTGGGGCTTCATTGTTTGGTGTTGCCGACTTGTCACTATTGAAAGCTGATACACACAAGTTTGAATCATATTACACTGACAGTCTTGTTGGGAAGGATGAATCATTACTGTATGCACGATCACCCATCAATTATGTTGATAGGCTTTCATGTCCAATAATCTTATTTCAAGGATTAGAAGACAAGGTTGTCCCTCCTGAACAAGCACGTAAGATCTATGCAGCAGTGAAGG

Fln Alignment:

biogeco2_mira_c6614___TFKAGASLFGVADLSLLKADTHKFESYYTDSLVGKDESLLYARSPINYVDRLSCPIILFQGLEDKVVPPEQARKIYAAVK
A9NWZ2__________________TFKAGASLFGVADVSLLKADTHKFESYYTDSLVGKDESLLYERSPINFVDRLSCPMILFQGLEDKVVPPEQARKIYAAVK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
102	33		66		0.997476
104			33	66	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain